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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 2279622

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id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
12239956 GT-AG 0 2.6355106004588748e-05 90 rna-XM_027997233.1 2279622 2 5394551 5394640 Aphis gossypii 80765 AAG|GTAAATATTA...TTTTACTTAATA/TAATTTTTTACT...TACAG|AAA 1 1 24.077
12239957 GT-AG 0 0.0001137522428901 56 rna-XM_027997233.1 2279622 3 5394325 5394380 Aphis gossypii 80765 ACT|GTAAGTTTAT...AATGTCATAAGT/TATCTACTAAAA...TCTAG|ATT 0 1 32.917
12239958 GT-AG 0 0.0002982344052713 67 rna-XM_027997233.1 2279622 4 5394144 5394210 Aphis gossypii 80765 CAA|GTACAGTTAA...ATAGTTTTATTT/TTTTATTTTATA...ATTAG|GAA 0 1 38.846
12239959 GT-AG 0 0.0056521787377914 751 rna-XM_027997233.1 2279622 5 5393189 5393939 Aphis gossypii 80765 CAA|GTAACTATCT...TTATATTTAATT/TTATATTTAATT...CATAG|GAA 0 1 49.454
12239960 GT-AG 0 0.0005595567305983 67 rna-XM_027997233.1 2279622 6 5392408 5392474 Aphis gossypii 80765 TCT|GTAAGTTATG...TTTTCATTAATT/TTGTTTTTCATT...TTTAG|GTT 0 1 86.583
12239961 GT-AG 0 1.000000099473604e-05 386 rna-XM_027997233.1 2279622 7 5391872 5392257 Aphis gossypii 80765 AAA|GTTAGTAAAG...TTATTCTTTTTA/ATTCTTTTTATT...TATAG|GTT 0 1 94.384
12240598 GT-AG 0 1.105039717494969e-05 111 rna-XM_027997233.1 2279622 1 5395088 5395198 Aphis gossypii 80765 TTG|GTAAGTAATT...TTTGTTTTAGCT/CGTTATTTTATT...CTTAG|ATT   0 1.56

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 23.713ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)