introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
7 rows where transcript_id = 2279622
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Suggested facets: length, phase, in_cds
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12239956 | GT-AG | 0 | 2.6355106004588748e-05 | 90 | rna-XM_027997233.1 2279622 | 2 | 5394551 | 5394640 | Aphis gossypii 80765 | AAG|GTAAATATTA...TTTTACTTAATA/TAATTTTTTACT...TACAG|AAA | 1 | 1 | 24.077 |
12239957 | GT-AG | 0 | 0.0001137522428901 | 56 | rna-XM_027997233.1 2279622 | 3 | 5394325 | 5394380 | Aphis gossypii 80765 | ACT|GTAAGTTTAT...AATGTCATAAGT/TATCTACTAAAA...TCTAG|ATT | 0 | 1 | 32.917 |
12239958 | GT-AG | 0 | 0.0002982344052713 | 67 | rna-XM_027997233.1 2279622 | 4 | 5394144 | 5394210 | Aphis gossypii 80765 | CAA|GTACAGTTAA...ATAGTTTTATTT/TTTTATTTTATA...ATTAG|GAA | 0 | 1 | 38.846 |
12239959 | GT-AG | 0 | 0.0056521787377914 | 751 | rna-XM_027997233.1 2279622 | 5 | 5393189 | 5393939 | Aphis gossypii 80765 | CAA|GTAACTATCT...TTATATTTAATT/TTATATTTAATT...CATAG|GAA | 0 | 1 | 49.454 |
12239960 | GT-AG | 0 | 0.0005595567305983 | 67 | rna-XM_027997233.1 2279622 | 6 | 5392408 | 5392474 | Aphis gossypii 80765 | TCT|GTAAGTTATG...TTTTCATTAATT/TTGTTTTTCATT...TTTAG|GTT | 0 | 1 | 86.583 |
12239961 | GT-AG | 0 | 1.000000099473604e-05 | 386 | rna-XM_027997233.1 2279622 | 7 | 5391872 | 5392257 | Aphis gossypii 80765 | AAA|GTTAGTAAAG...TTATTCTTTTTA/ATTCTTTTTATT...TATAG|GTT | 0 | 1 | 94.384 |
12240598 | GT-AG | 0 | 1.105039717494969e-05 | 111 | rna-XM_027997233.1 2279622 | 1 | 5395088 | 5395198 | Aphis gossypii 80765 | TTG|GTAAGTAATT...TTTGTTTTAGCT/CGTTATTTTATT...CTTAG|ATT | 0 | 1.56 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);