introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
5 rows where transcript_id = 2279620
This data as json, CSV (advanced)
Suggested facets: phase, in_cds
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12239950 | GT-AG | 0 | 1.000000099473604e-05 | 1448 | rna-XM_027993437.1 2279620 | 2 | 4177989 | 4179436 | Aphis gossypii 80765 | TAG|GTAAATACAA...TGGAGTTTAACC/TGGAGTTTAACC...TGTAG|GTA | 1 | 1 | 45.134 |
12239951 | GT-AG | 0 | 1.000000099473604e-05 | 764 | rna-XM_027993437.1 2279620 | 3 | 4176892 | 4177655 | Aphis gossypii 80765 | CAG|GTGAGAATTT...TTTTTTTTACAT/TTTTTTTTTACA...TCCAG|GCG | 1 | 1 | 59.475 |
12239952 | GT-AG | 0 | 1.000000099473604e-05 | 813 | rna-XM_027993437.1 2279620 | 4 | 4175907 | 4176719 | Aphis gossypii 80765 | AAG|GTAAAGTTTA...CGTATATTAATA/AATAAATTCACT...TGCAG|GTA | 2 | 1 | 66.882 |
12239953 | GT-AG | 0 | 1.000000099473604e-05 | 1053 | rna-XM_027993437.1 2279620 | 5 | 4174327 | 4175379 | Aphis gossypii 80765 | CGG|GTGAGTAATA...TTGTTTTTAACA/TTGTTTTTAACA...TTCAG|GCA | 1 | 1 | 89.578 |
12240597 | GT-AG | 0 | 1.000000099473604e-05 | 4096 | rna-XM_027993437.1 2279620 | 1 | 4180129 | 4184224 | Aphis gossypii 80765 | CAG|GTAAATCATC...TATTATTTAAAA/TATTATTTAAAA...CGCAG|GTT | 0 | 17.442 |
Advanced export
JSON shape: default, array, newline-delimited, object
CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);