introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
12 rows where transcript_id = 2279618
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Suggested facets: dinucleotide_pair, score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12239935 | GT-AG | 0 | 3.3120111853472754e-05 | 101 | rna-XM_027991493.1 2279618 | 2 | 2795472 | 2795572 | Aphis gossypii 80765 | TTG|GTAAATCTAA...AATTTTTTATTT/CAATTTTTTATT...TGTAG|ATC | 0 | 1 | 5.774 |
12239936 | GT-AG | 0 | 0.0027031543436998 | 92 | rna-XM_027991493.1 2279618 | 3 | 2795314 | 2795405 | Aphis gossypii 80765 | AAT|GTAAATTTCT...AAAATTTTAATT/AATTTATTAATT...TTCAG|ACA | 0 | 1 | 9.059 |
12239937 | GT-AG | 0 | 4.907411039943707e-05 | 55 | rna-XM_027991493.1 2279618 | 4 | 2795049 | 2795103 | Aphis gossypii 80765 | AAA|GTATGGTCAA...CTTGCATTTACA/CTTGCATTTACA...GTTAG|GTT | 0 | 1 | 19.512 |
12239938 | GC-AG | 0 | 1.000000099473604e-05 | 60 | rna-XM_027991493.1 2279618 | 5 | 2794857 | 2794916 | Aphis gossypii 80765 | AAG|GCATGTTGAT...AACTTTTTGAAA/AAAGAACTAACT...TTCAG|GAG | 0 | 1 | 26.083 |
12239939 | GT-AG | 0 | 8.326790117584819e-05 | 71 | rna-XM_027991493.1 2279618 | 6 | 2794650 | 2794720 | Aphis gossypii 80765 | TAG|GTTGTTTTTT...ATGTTCTTAATT/TAATTATTTATT...CAAAG|GTG | 1 | 1 | 32.852 |
12239940 | GT-AG | 0 | 5.1159969754858266e-05 | 61 | rna-XM_027991493.1 2279618 | 7 | 2794424 | 2794484 | Aphis gossypii 80765 | ACA|GTAAATATAT...ATGATCCTAACA/TATATATTTATA...TTCAG|TTG | 1 | 1 | 41.065 |
12239941 | GT-AG | 0 | 1.000000099473604e-05 | 61 | rna-XM_027991493.1 2279618 | 8 | 2794094 | 2794154 | Aphis gossypii 80765 | AAC|GTAAAAATAA...TATTATTTAATA/TTTAGTCTCACG...TTTAG|TAT | 0 | 1 | 54.455 |
12239942 | GT-AG | 0 | 0.4093922898451471 | 58 | rna-XM_027991493.1 2279618 | 9 | 2793839 | 2793896 | Aphis gossypii 80765 | AAA|GTATACATAC...TGATCTTTAAAT/GTTTATTTCAAT...TGTAG|ATT | 2 | 1 | 64.261 |
12239943 | GT-AG | 0 | 2.228259093039285e-05 | 97 | rna-XM_027991493.1 2279618 | 10 | 2793534 | 2793630 | Aphis gossypii 80765 | AAT|GTAAATATTA...GTATGGTTAATA/GTATGGTTAATA...TGTAG|ATT | 0 | 1 | 74.614 |
12239944 | GT-AG | 0 | 1.000000099473604e-05 | 57 | rna-XM_027991493.1 2279618 | 11 | 2793301 | 2793357 | Aphis gossypii 80765 | TGG|GTAAAATGAA...AGATTTTTGATT/AGATTTTTGATT...TTTAG|AAC | 2 | 1 | 83.375 |
12239945 | GT-AG | 0 | 0.0001215438388396 | 94 | rna-XM_027991493.1 2279618 | 12 | 2793111 | 2793204 | Aphis gossypii 80765 | ATG|GTAGATTAAA...AACACTTTAACA/AACACTTTAACA...TTCAG|GTT | 2 | 1 | 88.153 |
12239946 | GT-AG | 0 | 1.000000099473604e-05 | 104 | rna-XM_027991493.1 2279618 | 13 | 2792894 | 2792997 | Aphis gossypii 80765 | AAT|GTAAGTTGAA...ATAAACTTATTT/TATAAACTTATT...TTTAG|TTC | 1 | 1 | 93.778 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);