introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
10 rows where transcript_id = 2279617
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Suggested facets: score, phase, in_cds
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12239926 | GT-AG | 0 | 3.150636331937553e-05 | 83 | rna-XM_027998589.1 2279617 | 2 | 1851955 | 1852037 | Aphis gossypii 80765 | TAA|GTAATTCCAA...TTATTTTTATTT/TTTATTTTTATT...TAAAG|TAA | 1 | 1 | 16.037 |
12239927 | GT-AG | 0 | 4.420750277262248e-05 | 67 | rna-XM_027998589.1 2279617 | 3 | 1851753 | 1851819 | Aphis gossypii 80765 | CTG|GTAATTTGAA...AGTTTTTTAATA/TTTATTTTTATA...TTTAG|TTG | 1 | 1 | 22.578 |
12239928 | GT-AG | 0 | 1.000000099473604e-05 | 56 | rna-XM_027998589.1 2279617 | 4 | 1851620 | 1851675 | Aphis gossypii 80765 | ACG|GTTTGAAAAG...ATTATTTCAAAT/GATTATTTCAAA...TTCAG|ATT | 0 | 1 | 26.308 |
12239929 | GT-AG | 0 | 1.000000099473604e-05 | 69 | rna-XM_027998589.1 2279617 | 5 | 1851382 | 1851450 | Aphis gossypii 80765 | CTG|GTAAGTAGTA...TTTTTTCTAATA/TTTTTTCTAATA...TTTAG|GAA | 1 | 1 | 34.496 |
12239930 | GT-AG | 0 | 1.696079301570215e-05 | 58 | rna-XM_027998589.1 2279617 | 6 | 1851202 | 1851259 | Aphis gossypii 80765 | CAA|GTAAATTAAA...AATAATTTGACT/ATTTGACTTACA...TTAAG|GTT | 0 | 1 | 40.407 |
12239931 | GT-AG | 0 | 8.483867461871883e-05 | 180 | rna-XM_027998589.1 2279617 | 7 | 1850865 | 1851044 | Aphis gossypii 80765 | TGG|GTAAATTTAA...AATATTTTATTT/AAATATTTTATT...TATAG|GTT | 1 | 1 | 48.014 |
12239932 | GT-AG | 0 | 1.000000099473604e-05 | 62 | rna-XM_027998589.1 2279617 | 8 | 1850693 | 1850754 | Aphis gossypii 80765 | CAA|GTTAGTATTT...GTATTCTTATTT/AGTATTCTTATT...TTTAG|TGT | 0 | 1 | 53.343 |
12239933 | GT-AG | 0 | 0.0010581674904161 | 63 | rna-XM_027998589.1 2279617 | 9 | 1850488 | 1850550 | Aphis gossypii 80765 | CAG|GTATATAATT...TTATTTTTAAAA/TTATTTTTAAAA...TTTAG|GTG | 1 | 1 | 60.223 |
12239934 | GT-AG | 0 | 0.0059210144950239 | 584 | rna-XM_027998589.1 2279617 | 10 | 1849258 | 1849841 | Aphis gossypii 80765 | AAA|GTATGTTAAT...CACTTTTTAATA/ACTTAGTTCACT...TTTAG|GAG | 2 | 1 | 91.521 |
12240590 | GT-AG | 0 | 1.000000099473604e-05 | 475 | rna-XM_027998589.1 2279617 | 1 | 1852290 | 1852764 | Aphis gossypii 80765 | GCG|GTAAGTAGTT...TACTTTTTATTT/TTACTTTTTATT...TTTAG|ATA | 0 | 4.36 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);