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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

10 rows where transcript_id = 2279617

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Suggested facets: score, phase, in_cds

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
12239926 GT-AG 0 3.150636331937553e-05 83 rna-XM_027998589.1 2279617 2 1851955 1852037 Aphis gossypii 80765 TAA|GTAATTCCAA...TTATTTTTATTT/TTTATTTTTATT...TAAAG|TAA 1 1 16.037
12239927 GT-AG 0 4.420750277262248e-05 67 rna-XM_027998589.1 2279617 3 1851753 1851819 Aphis gossypii 80765 CTG|GTAATTTGAA...AGTTTTTTAATA/TTTATTTTTATA...TTTAG|TTG 1 1 22.578
12239928 GT-AG 0 1.000000099473604e-05 56 rna-XM_027998589.1 2279617 4 1851620 1851675 Aphis gossypii 80765 ACG|GTTTGAAAAG...ATTATTTCAAAT/GATTATTTCAAA...TTCAG|ATT 0 1 26.308
12239929 GT-AG 0 1.000000099473604e-05 69 rna-XM_027998589.1 2279617 5 1851382 1851450 Aphis gossypii 80765 CTG|GTAAGTAGTA...TTTTTTCTAATA/TTTTTTCTAATA...TTTAG|GAA 1 1 34.496
12239930 GT-AG 0 1.696079301570215e-05 58 rna-XM_027998589.1 2279617 6 1851202 1851259 Aphis gossypii 80765 CAA|GTAAATTAAA...AATAATTTGACT/ATTTGACTTACA...TTAAG|GTT 0 1 40.407
12239931 GT-AG 0 8.483867461871883e-05 180 rna-XM_027998589.1 2279617 7 1850865 1851044 Aphis gossypii 80765 TGG|GTAAATTTAA...AATATTTTATTT/AAATATTTTATT...TATAG|GTT 1 1 48.014
12239932 GT-AG 0 1.000000099473604e-05 62 rna-XM_027998589.1 2279617 8 1850693 1850754 Aphis gossypii 80765 CAA|GTTAGTATTT...GTATTCTTATTT/AGTATTCTTATT...TTTAG|TGT 0 1 53.343
12239933 GT-AG 0 0.0010581674904161 63 rna-XM_027998589.1 2279617 9 1850488 1850550 Aphis gossypii 80765 CAG|GTATATAATT...TTATTTTTAAAA/TTATTTTTAAAA...TTTAG|GTG 1 1 60.223
12239934 GT-AG 0 0.0059210144950239 584 rna-XM_027998589.1 2279617 10 1849258 1849841 Aphis gossypii 80765 AAA|GTATGTTAAT...CACTTTTTAATA/ACTTAGTTCACT...TTTAG|GAG 2 1 91.521
12240590 GT-AG 0 1.000000099473604e-05 475 rna-XM_027998589.1 2279617 1 1852290 1852764 Aphis gossypii 80765 GCG|GTAAGTAGTT...TACTTTTTATTT/TTACTTTTTATT...TTTAG|ATA   0 4.36

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 55.301ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)