introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
7 rows where transcript_id = 2279616
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Suggested facets: score, phase, in_cds
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12239920 | GT-AG | 0 | 1.000000099473604e-05 | 44772 | rna-XM_027997585.1 2279616 | 1 | 375224 | 419995 | Aphis gossypii 80765 | CAC|GTGAGTACGA...GGAATTTTAATA/ATTTTAATAATA...CACAG|AGC | 0 | 1 | 11.801 |
12239921 | GT-AG | 0 | 1.000000099473604e-05 | 9570 | rna-XM_027997585.1 2279616 | 2 | 365330 | 374899 | Aphis gossypii 80765 | TTG|GTGAGTTCTT...TATTTTTTATTT/TTTTTTTTTATT...TTCAG|AGC | 0 | 1 | 25.962 |
12239922 | GT-AG | 0 | 1.000000099473604e-05 | 1573 | rna-XM_027997585.1 2279616 | 3 | 363644 | 365216 | Aphis gossypii 80765 | TGG|GTGAGCAGTG...ACGTGTTTGACC/ACGTGTTTGACC...CGCAG|GTA | 2 | 1 | 30.9 |
12239923 | GT-AG | 0 | 1.000000099473604e-05 | 2352 | rna-XM_027997585.1 2279616 | 4 | 360948 | 363299 | Aphis gossypii 80765 | AAG|GTAGGTACCA...TTTTCCTTGCCA/GCGTGTTTTATT...ATCAG|ATG | 1 | 1 | 45.935 |
12239924 | GT-AG | 0 | 1.000000099473604e-05 | 516 | rna-XM_027997585.1 2279616 | 5 | 360098 | 360613 | Aphis gossypii 80765 | CAG|GTAAGCGAAA...TTTTTTTTACTA/ATTTTTTTTACT...CACAG|GTA | 2 | 1 | 60.533 |
12239925 | GT-AG | 0 | 1.000000099473604e-05 | 151 | rna-XM_027997585.1 2279616 | 6 | 359437 | 359587 | Aphis gossypii 80765 | GAC|GTGAGTGTCC...AATATTTTAATC/AATATTTTAATC...TACAG|GCC | 2 | 1 | 82.823 |
12240589 | GT-AG | 0 | 5.509079776447139e-05 | 2741 | rna-XM_027997585.1 2279616 | 7 | 356576 | 359316 | Aphis gossypii 80765 | TGG|GTACGTTGAC...TGTTGTTTAAAG/AGATGATTAATT...TTTAG|TTT | 0 | 88.068 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);