introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
6 rows where transcript_id = 2279615
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Suggested facets: score, phase, in_cds
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12239915 | GT-AG | 0 | 1.2835648555594834 | 627 | rna-XM_027998456.1 2279615 | 2 | 4205239 | 4205865 | Aphis gossypii 80765 | AAG|GTATCTTATT...CATTCATTAATA/ATTGTTTTTACA...GATAG|GTA | 0 | 1 | 23.693 |
12239916 | GT-AG | 0 | 2.8247168245404136e-05 | 1758 | rna-XM_027998456.1 2279615 | 3 | 4203225 | 4204982 | Aphis gossypii 80765 | ATG|GTACGTACAT...ATGTTTTTAATT/ATGTTTTTAATT...TTTAG|GGT | 1 | 1 | 35.751 |
12239917 | GT-AG | 0 | 1.000000099473604e-05 | 952 | rna-XM_027998456.1 2279615 | 4 | 4202115 | 4203066 | Aphis gossypii 80765 | AAG|GTATTAACAC...TTATTCTTTGTA/TTTAAATTAATT...TTTAG|GCG | 0 | 1 | 43.194 |
12239918 | GT-AG | 0 | 1.3722151210905485e-05 | 202 | rna-XM_027998456.1 2279615 | 5 | 4201362 | 4201563 | Aphis gossypii 80765 | CAA|GTACGATGGT...ATAAATTTGACA/TAAGTACTAACA...TATAG|ATA | 2 | 1 | 69.147 |
12239919 | GT-AG | 0 | 1.000000099473604e-05 | 3921 | rna-XM_027998456.1 2279615 | 6 | 4197175 | 4201095 | Aphis gossypii 80765 | AAG|GTAATATAAA...ATTATTTTATAA/TATTATTTTATA...TGTAG|GTA | 1 | 1 | 81.677 |
12240588 | GT-AG | 0 | 1.000000099473604e-05 | 3291 | rna-XM_027998456.1 2279615 | 1 | 4206318 | 4209608 | Aphis gossypii 80765 | AAG|GTAATAATTA...GTATTTGTATTT/AGTATTTGTATT...TACAG|TGA | 0 | 5.747 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);