introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
9 rows where transcript_id = 2279614
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12239906 | GT-AG | 0 | 1.000000099473604e-05 | 84 | rna-XM_027998539.1 2279614 | 1 | 537461 | 537544 | Aphis gossypii 80765 | TTG|GTGAGTTTGA...TTATATTTATCA/CTTTTACTAACA...TATAG|CTG | 0 | 1 | 6.855 |
12239907 | GT-AG | 0 | 1.000000099473604e-05 | 59 | rna-XM_027998539.1 2279614 | 2 | 537737 | 537795 | Aphis gossypii 80765 | GAA|GTAAGTAAAC...TTAATCATAAAT/AAATTAATCATA...TTTAG|GAT | 0 | 1 | 16.393 |
12239908 | GT-AG | 0 | 1.000000099473604e-05 | 1506 | rna-XM_027998539.1 2279614 | 3 | 538017 | 539522 | Aphis gossypii 80765 | TAG|GTAAAAAAAT...TATGTATTAACA/ATAATATTAATT...TTTAG|TAA | 2 | 1 | 27.372 |
12239909 | GT-AG | 0 | 0.0008136943776352 | 76 | rna-XM_027998539.1 2279614 | 4 | 539609 | 539684 | Aphis gossypii 80765 | CAG|GTACCTACAT...AATTGTTTAAAT/AATTGTTTAAAT...TGTAG|GTT | 1 | 1 | 31.644 |
12239910 | GT-AG | 0 | 1.1389915720033434e-05 | 63 | rna-XM_027998539.1 2279614 | 5 | 539816 | 539878 | Aphis gossypii 80765 | GTG|GTTGGTTTCA...TATATTTTAATT/TATATTTTAATT...TTTAG|AAC | 0 | 1 | 38.152 |
12239911 | GT-AG | 0 | 0.0029955093987442 | 1383 | rna-XM_027998539.1 2279614 | 6 | 540073 | 541455 | Aphis gossypii 80765 | TAG|GTATTTTATT...ATTTATTTATTT/TATTTATTTATT...TTTAG|AGC | 2 | 1 | 47.789 |
12239912 | GT-AG | 0 | 0.1299131920713945 | 71 | rna-XM_027998539.1 2279614 | 7 | 541867 | 541937 | Aphis gossypii 80765 | AAA|GTATGTTTGT...CATTTTTTAATA/CATTTTTTAATA...TGTAG|TCA | 2 | 1 | 68.207 |
12239913 | GT-AG | 0 | 3.783347027066375e-05 | 642 | rna-XM_027998539.1 2279614 | 8 | 542191 | 542832 | Aphis gossypii 80765 | GAG|GTAATTTTAG...TTTTCTCTAATT/TTTTCTCTAATT...CTCAG|GCT | 0 | 1 | 80.775 |
12239914 | GT-AG | 0 | 1.000000099473604e-05 | 79 | rna-XM_027998539.1 2279614 | 9 | 543003 | 543081 | Aphis gossypii 80765 | AAG|GTGATTTATC...TATATTTTATTA/ATATATTTTATT...TTTAG|TAA | 2 | 1 | 89.22 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);