home / WtMTA

introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

14 rows where transcript_id = 2279612

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, length, phase, in_cds

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
12239892 GT-AG 0 1.000000099473604e-05 352 rna-XM_027980847.1 2279612 2 4675939 4676290 Aphis gossypii 80765 AAG|GTAGGTACCT...ATAATTTTACTT/TAGATTTTCAAT...ATTAG|GAG 0 1 2.189
12239893 GT-AG 0 0.0019281676698699 69 rna-XM_027980847.1 2279612 3 4675704 4675772 Aphis gossypii 80765 CTA|GTATGATCAG...AATTTCTAAACA/AATTATTTAATA...TTTAG|ACA 1 1 10.09
12239894 GT-AG 0 0.0032149843918166 66 rna-XM_027980847.1 2279612 4 4675441 4675506 Aphis gossypii 80765 GTG|GTATGTAGTA...AATTCTTTATTT/ATTTTATTTATT...TTTAG|TCA 0 1 19.467
12239895 GT-AG 0 1.000000099473604e-05 65 rna-XM_027980847.1 2279612 5 4675258 4675322 Aphis gossypii 80765 ATG|GTTGGTAAAT...ATTTATTTAATT/ATTTATTTAATT...CATAG|AGT 1 1 25.083
12239896 GT-AG 0 0.4681926479408931 70 rna-XM_027980847.1 2279612 6 4674940 4675009 Aphis gossypii 80765 GTA|GTATGTTTCA...TCATTTTTAAAT/TGATTATTTATT...TCTAG|AAA 0 1 36.887
12239897 GT-AG 0 0.0001260158437634 55 rna-XM_027980847.1 2279612 7 4674817 4674871 Aphis gossypii 80765 TGT|GTAAGTTAAA...TTAGTTTTATTG/ATTAGTTTTATT...TTTAG|ATT 2 1 40.124
12239898 GT-AG 0 1.000000099473604e-05 71 rna-XM_027980847.1 2279612 8 4674648 4674718 Aphis gossypii 80765 TAG|GTAATAATTA...TTTTGTTTAATA/TTTTGTTTAATA...TTCAG|AAA 1 1 44.788
12239899 GT-AG 0 5.380087702185194e-05 167 rna-XM_027980847.1 2279612 9 4674296 4674462 Aphis gossypii 80765 GAG|GTATTGATAT...AAATTATTAATA/ATAATGTTCATA...TGCAG|AGT 0 1 53.594
12239900 GT-AG 0 1.000000099473604e-05 71 rna-XM_027980847.1 2279612 10 4674045 4674115 Aphis gossypii 80765 ACA|GTTAGTAATC...TTTATCTTATTT/ATTTATCTTATT...ATTAG|GGA 0 1 62.161
12239901 GT-AG 0 3.964860075743316e-05 63 rna-XM_027980847.1 2279612 11 4673744 4673806 Aphis gossypii 80765 TCA|GTAAGTAAAT...AAATCTTTAGTT/TAGTTTTTAAAA...TTCAG|AAA 1 1 73.489
12239902 GT-AG 0 2.2765903227364216e-05 74 rna-XM_027980847.1 2279612 12 4673453 4673526 Aphis gossypii 80765 ATG|GTAATTATAT...ATTTTTTTATTT/AATTTTTTTATT...TTCAG|TTG 2 1 83.817
12239903 GT-AG 0 0.0055811888347108 317 rna-XM_027980847.1 2279612 13 4673033 4673349 Aphis gossypii 80765 TCT|GTAAGTTCTT...GTTCTCTTAATT/TAATTTCTTATG...TTTAG|GGT 0 1 88.72
12239904 GT-AG 0 1.000000099473604e-05 155 rna-XM_027980847.1 2279612 14 4672744 4672898 Aphis gossypii 80765 CAA|GTAATATATT...AATTCATTGAGC/ACAAAATTCATT...TATAG|ATT 2 1 95.098
12240585 GT-AG 0 5.545037078917437e-05 94 rna-XM_027980847.1 2279612 1 4676371 4676464 Aphis gossypii 80765 TAA|GTAGGTAGTT...TTTTTCTGAATT/TTTTTTCTGAAT...TGTAG|ACA   0 0.904

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options:

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 27.142ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)