introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
14 rows where transcript_id = 2279612
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Suggested facets: score, length, phase, in_cds
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12239892 | GT-AG | 0 | 1.000000099473604e-05 | 352 | rna-XM_027980847.1 2279612 | 2 | 4675939 | 4676290 | Aphis gossypii 80765 | AAG|GTAGGTACCT...ATAATTTTACTT/TAGATTTTCAAT...ATTAG|GAG | 0 | 1 | 2.189 |
12239893 | GT-AG | 0 | 0.0019281676698699 | 69 | rna-XM_027980847.1 2279612 | 3 | 4675704 | 4675772 | Aphis gossypii 80765 | CTA|GTATGATCAG...AATTTCTAAACA/AATTATTTAATA...TTTAG|ACA | 1 | 1 | 10.09 |
12239894 | GT-AG | 0 | 0.0032149843918166 | 66 | rna-XM_027980847.1 2279612 | 4 | 4675441 | 4675506 | Aphis gossypii 80765 | GTG|GTATGTAGTA...AATTCTTTATTT/ATTTTATTTATT...TTTAG|TCA | 0 | 1 | 19.467 |
12239895 | GT-AG | 0 | 1.000000099473604e-05 | 65 | rna-XM_027980847.1 2279612 | 5 | 4675258 | 4675322 | Aphis gossypii 80765 | ATG|GTTGGTAAAT...ATTTATTTAATT/ATTTATTTAATT...CATAG|AGT | 1 | 1 | 25.083 |
12239896 | GT-AG | 0 | 0.4681926479408931 | 70 | rna-XM_027980847.1 2279612 | 6 | 4674940 | 4675009 | Aphis gossypii 80765 | GTA|GTATGTTTCA...TCATTTTTAAAT/TGATTATTTATT...TCTAG|AAA | 0 | 1 | 36.887 |
12239897 | GT-AG | 0 | 0.0001260158437634 | 55 | rna-XM_027980847.1 2279612 | 7 | 4674817 | 4674871 | Aphis gossypii 80765 | TGT|GTAAGTTAAA...TTAGTTTTATTG/ATTAGTTTTATT...TTTAG|ATT | 2 | 1 | 40.124 |
12239898 | GT-AG | 0 | 1.000000099473604e-05 | 71 | rna-XM_027980847.1 2279612 | 8 | 4674648 | 4674718 | Aphis gossypii 80765 | TAG|GTAATAATTA...TTTTGTTTAATA/TTTTGTTTAATA...TTCAG|AAA | 1 | 1 | 44.788 |
12239899 | GT-AG | 0 | 5.380087702185194e-05 | 167 | rna-XM_027980847.1 2279612 | 9 | 4674296 | 4674462 | Aphis gossypii 80765 | GAG|GTATTGATAT...AAATTATTAATA/ATAATGTTCATA...TGCAG|AGT | 0 | 1 | 53.594 |
12239900 | GT-AG | 0 | 1.000000099473604e-05 | 71 | rna-XM_027980847.1 2279612 | 10 | 4674045 | 4674115 | Aphis gossypii 80765 | ACA|GTTAGTAATC...TTTATCTTATTT/ATTTATCTTATT...ATTAG|GGA | 0 | 1 | 62.161 |
12239901 | GT-AG | 0 | 3.964860075743316e-05 | 63 | rna-XM_027980847.1 2279612 | 11 | 4673744 | 4673806 | Aphis gossypii 80765 | TCA|GTAAGTAAAT...AAATCTTTAGTT/TAGTTTTTAAAA...TTCAG|AAA | 1 | 1 | 73.489 |
12239902 | GT-AG | 0 | 2.2765903227364216e-05 | 74 | rna-XM_027980847.1 2279612 | 12 | 4673453 | 4673526 | Aphis gossypii 80765 | ATG|GTAATTATAT...ATTTTTTTATTT/AATTTTTTTATT...TTCAG|TTG | 2 | 1 | 83.817 |
12239903 | GT-AG | 0 | 0.0055811888347108 | 317 | rna-XM_027980847.1 2279612 | 13 | 4673033 | 4673349 | Aphis gossypii 80765 | TCT|GTAAGTTCTT...GTTCTCTTAATT/TAATTTCTTATG...TTTAG|GGT | 0 | 1 | 88.72 |
12239904 | GT-AG | 0 | 1.000000099473604e-05 | 155 | rna-XM_027980847.1 2279612 | 14 | 4672744 | 4672898 | Aphis gossypii 80765 | CAA|GTAATATATT...AATTCATTGAGC/ACAAAATTCATT...TATAG|ATT | 2 | 1 | 95.098 |
12240585 | GT-AG | 0 | 5.545037078917437e-05 | 94 | rna-XM_027980847.1 2279612 | 1 | 4676371 | 4676464 | Aphis gossypii 80765 | TAA|GTAGGTAGTT...TTTTTCTGAATT/TTTTTTCTGAAT...TGTAG|ACA | 0 | 0.904 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);