introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
14 rows where transcript_id = 2279608
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12239855 | GT-AG | 0 | 0.1931671394795816 | 63 | rna-XM_027998273.1 2279608 | 1 | 4589288 | 4589350 | Aphis gossypii 80765 | AAG|GTATCATGCT...TTATTCTTACTA/TTTATTCTTACT...TGTAG|ATC | 0 | 1 | 4.993 |
12239856 | GT-AG | 0 | 0.1297067593438587 | 74 | rna-XM_027998273.1 2279608 | 2 | 4589090 | 4589163 | Aphis gossypii 80765 | TTG|GTATCTAAAC...TATTTATTAATC/TATTTATTAATC...TAAAG|GTA | 1 | 1 | 10.726 |
12239857 | GT-AG | 0 | 1.000000099473604e-05 | 195 | rna-XM_027998273.1 2279608 | 3 | 4588780 | 4588974 | Aphis gossypii 80765 | CAT|GTGAGTAGAT...CTAATTTTAATG/TAATTACTAATT...ATTAG|GTA | 2 | 1 | 16.043 |
12239858 | GT-AG | 0 | 0.0005481795591253 | 68 | rna-XM_027998273.1 2279608 | 4 | 4588582 | 4588649 | Aphis gossypii 80765 | AAG|GTAAACTATA...CTTTTTTTAAAT/CTTTTTTTAAAT...TTTAG|ATG | 0 | 1 | 22.053 |
12239859 | GT-AG | 0 | 1.198157996895851 | 79 | rna-XM_027998273.1 2279608 | 5 | 4588306 | 4588384 | Aphis gossypii 80765 | AAA|GTATATTTTA...TATTTTTTATTT/TTTTTATTTACT...ATTAG|AAA | 2 | 1 | 31.16 |
12239860 | GT-AG | 0 | 0.0064411794651612 | 71 | rna-XM_027998273.1 2279608 | 6 | 4588057 | 4588127 | Aphis gossypii 80765 | TAT|GTAATTTTTA...TAAACTTTAATA/AATGTATTTATT...TTTAG|AGT | 0 | 1 | 39.39 |
12239861 | GT-AG | 0 | 1.000000099473604e-05 | 67 | rna-XM_027998273.1 2279608 | 7 | 4587905 | 4587971 | Aphis gossypii 80765 | CAG|GTTATTAAGT...TAATACTTGACG/TAAATACTGATT...TTTAG|GTT | 1 | 1 | 43.319 |
12239862 | GT-AG | 0 | 1.000000099473604e-05 | 206 | rna-XM_027998273.1 2279608 | 8 | 4587590 | 4587795 | Aphis gossypii 80765 | AAG|GTAAGCATAT...ACCATTTTAAAT/TATTTAGTTATT...TGTAG|GAC | 2 | 1 | 48.359 |
12239863 | GT-AG | 0 | 2.2387670211534715e-05 | 92 | rna-XM_027998273.1 2279608 | 9 | 4587383 | 4587474 | Aphis gossypii 80765 | TCT|GTAAGAATAA...AATTTTTTATTT/AAATTTTTTATT...CACAG|ATG | 0 | 1 | 53.675 |
12239864 | GT-AG | 0 | 0.0001205175020267 | 710 | rna-XM_027998273.1 2279608 | 10 | 4586517 | 4587226 | Aphis gossypii 80765 | GAG|GTATTAATAG...ATGTTTTTGATT/ATGTTTTTGATT...TTTAG|GAT | 0 | 1 | 60.888 |
12239865 | GT-AG | 0 | 0.0001176308250381 | 218 | rna-XM_027998273.1 2279608 | 11 | 4586102 | 4586319 | Aphis gossypii 80765 | AGT|GTAAGTTGTA...ATACCATTAAAA/ATAATATTAATA...TCTAG|TTA | 2 | 1 | 69.995 |
12239866 | GT-AG | 0 | 0.0002284885913503 | 72 | rna-XM_027998273.1 2279608 | 12 | 4585859 | 4585930 | Aphis gossypii 80765 | TAG|GTAGTTTATT...TTACTCTTATTT/TCTTATTTAATT...TTTAG|TCG | 2 | 1 | 77.901 |
12239867 | GT-AG | 0 | 1.3927698369300515e-05 | 62 | rna-XM_027998273.1 2279608 | 13 | 4585687 | 4585748 | Aphis gossypii 80765 | ATG|GTTTGTATAT...TAATTTATAGTT/TTATAGTTCATC...TACAG|AAA | 1 | 1 | 82.987 |
12239868 | GT-AG | 0 | 1.000000099473604e-05 | 91 | rna-XM_027998273.1 2279608 | 14 | 4585365 | 4585455 | Aphis gossypii 80765 | AAG|GTGTGAATGT...ATTATTTTAATT/ATTATTTTAATT...TTTAG|CTA | 1 | 1 | 93.666 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);