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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

18 rows where transcript_id = 2279606

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
12239831 GT-AG 0 1.000000099473604e-05 134 rna-XM_027987747.1 2279606 1 1754501 1754634 Aphis gossypii 80765 TTT|GTGAGTGTCG...TGTTTCTTTTTT/GTTATATTAATG...TTCAG|ACA 2 1 0.364
12239832 GT-AG 0 0.0001588854848366 192 rna-XM_027987747.1 2279606 2 1754226 1754417 Aphis gossypii 80765 ATC|GTAAGTATAA...GTTTCTTTAAAT/ATATTTTTTATA...TACAG|AAG 1 1 4.138
12239833 GT-AG 0 0.0002995031634373 74 rna-XM_027987747.1 2279606 3 1754044 1754117 Aphis gossypii 80765 AAT|GTACGTATCA...ATAATTTTGTTC/TGTATATTCAAT...CCTAG|ACA 1 1 9.05
12239834 GT-AG 0 1.8836426613876824e-05 278 rna-XM_027987747.1 2279606 4 1753691 1753968 Aphis gossypii 80765 ATG|GTAGGTATTT...TTAACCTAAATT/CTGCATTTAACC...TTTAG|AGT 1 1 12.46
12239835 GT-AG 0 1.000000099473604e-05 1168 rna-XM_027987747.1 2279606 5 1752434 1753601 Aphis gossypii 80765 CAG|GTCAGTTTTT...ATTTTATTAATT/ATTTTATTAATT...GTTAG|GCT 0 1 16.508
12239836 GT-AG 0 1.000000099473604e-05 250 rna-XM_027987747.1 2279606 6 1752094 1752343 Aphis gossypii 80765 AAG|GTACGATATC...TTTTTTTTTTCT/CTATTTTTCATC...TACAG|ATT 0 1 20.6
12239837 GT-AG 0 0.0010543857202376 99 rna-XM_027987747.1 2279606 7 1751916 1752014 Aphis gossypii 80765 CGG|GTATGTATTA...AATATATTAATA/AATATATTAATA...TGCAG|GTT 1 1 24.193
12239838 GT-AG 0 3.9630334920764135e-05 137 rna-XM_027987747.1 2279606 8 1751708 1751844 Aphis gossypii 80765 ACT|GTAAGTATCG...ATTATATTATTC/TATTATATTATT...TTTAG|GTA 0 1 27.422
12239839 GT-AG 0 1.000000099473604e-05 873 rna-XM_027987747.1 2279606 9 1750630 1751502 Aphis gossypii 80765 AGG|GTAGGTATAA...CACCTATTAATT/CACCTATTAATT...TTCAG|ACG 1 1 36.744
12239840 GT-AG 0 0.2933387794306757 132 rna-XM_027987747.1 2279606 10 1750240 1750371 Aphis gossypii 80765 TCT|GTAACTTGAT...TTGATCTTATTT/TTTGATCTTATT...AATAG|CTG 1 1 48.477
12239841 GT-AG 0 2.140797321415586e-05 111 rna-XM_027987747.1 2279606 11 1749955 1750065 Aphis gossypii 80765 CCG|GTAGGCCGCT...TAGACATTAATT/TTTGTTGTAATT...CCTAG|GTC 1 1 56.389
12239842 GT-AG 0 1.000000099473604e-05 119 rna-XM_027987747.1 2279606 12 1749760 1749878 Aphis gossypii 80765 AAG|GTAATGCAAA...CCTATTTTAATC/CCTATTTTAATC...CACAG|GTC 2 1 59.845
12239843 GT-AG 0 0.0002023058891067 364 rna-XM_027987747.1 2279606 13 1749295 1749658 Aphis gossypii 80765 CAG|GTATGGTACA...TTACTCTTATTT/CTTATTTTAATT...GACAG|GTA 1 1 64.438
12239844 GT-AG 0 1.000000099473604e-05 131 rna-XM_027987747.1 2279606 14 1749028 1749158 Aphis gossypii 80765 ATT|GTGAGTATTT...TATACCTAAACG/GTCTGTTTTATA...TGCAG|AAA 2 1 70.623
12239845 GT-AG 0 1.000000099473604e-05 505 rna-XM_027987747.1 2279606 15 1748448 1748952 Aphis gossypii 80765 GCG|GTAATTATCG...ATTATTTCAAAT/AATTATTTCAAA...TTCAG|GTA 2 1 74.034
12239846 GT-AG 0 1.000000099473604e-05 812 rna-XM_027987747.1 2279606 16 1747578 1748389 Aphis gossypii 80765 CAG|GTTAGTATTG...TATATTGTAATG/TATATTGTAATG...GTCAG|ACC 0 1 76.671
12239847 GT-AG 0 1.000000099473604e-05 780 rna-XM_027987747.1 2279606 17 1746492 1747271 Aphis gossypii 80765 AAA|GTAAGTGCAA...CAAATTTTAATT/CAAATTTTAATT...TTTAG|AAT 0 1 90.587
12239848 GT-AG 0 1.000000099473604e-05 3167 rna-XM_027987747.1 2279606 18 1743289 1746455 Aphis gossypii 80765 CAA|GTAAGTAAAC...TTATCTTTATCT/ATCTGTTTCATT...TGAAG|GTA 0 1 92.224

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 30.357ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)