introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
8 rows where transcript_id = 2279602
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12239804 | GT-AG | 0 | 1.922545460522072e-05 | 2570 | rna-XM_027989428.1 2279602 | 1 | 5158114 | 5160683 | Aphis gossypii 80765 | CGT|GTAAGTATGT...TTAAGCTTAAAA/TATAAACTCATT...TTCAG|AAG | 2 | 1 | 8.584 |
12239805 | GT-AG | 0 | 1.000000099473604e-05 | 66 | rna-XM_027989428.1 2279602 | 2 | 5160835 | 5160900 | Aphis gossypii 80765 | AAA|GTAAAATATT...AATTTTTTATAA/TCTCTATTCATC...AATAG|GTG | 0 | 1 | 15.163 |
12239806 | GT-AG | 0 | 1.000000099473604e-05 | 61 | rna-XM_027989428.1 2279602 | 3 | 5161066 | 5161126 | Aphis gossypii 80765 | CAA|GTAAGTCTAA...AATTCATTAAAC/AAAAAATTCATT...TTCAG|TCT | 0 | 1 | 22.353 |
12239807 | GT-AG | 0 | 1.000000099473604e-05 | 82 | rna-XM_027989428.1 2279602 | 4 | 5161403 | 5161484 | Aphis gossypii 80765 | AAT|GTAAAAACTA...AATTTGTTAATT/AATTTGTTAATT...TCTAG|ACT | 0 | 1 | 34.379 |
12239808 | GT-AG | 0 | 3.261705086298016e-05 | 58 | rna-XM_027989428.1 2279602 | 5 | 5161737 | 5161794 | Aphis gossypii 80765 | CAA|GTAAAGTATT...TAATTTTTAATT/ATTTTATTAATT...TTCAG|ATG | 0 | 1 | 45.359 |
12239809 | GT-AG | 0 | 1.000000099473604e-05 | 983 | rna-XM_027989428.1 2279602 | 6 | 5161940 | 5162922 | Aphis gossypii 80765 | CTG|GTAATAGGTT...ATTATTTTAAAT/ATTATTTTAAAT...TTTAG|TTG | 1 | 1 | 51.678 |
12239810 | GT-AG | 0 | 8.319407758340125e-05 | 82 | rna-XM_027989428.1 2279602 | 7 | 5163063 | 5163144 | Aphis gossypii 80765 | CGT|GTACTAATAA...AATTCTTTCATT/TATTTATTTATT...TCTAG|AAT | 0 | 1 | 57.778 |
12239811 | GT-AG | 0 | 1.836865774939469e-05 | 86 | rna-XM_027989428.1 2279602 | 8 | 5163233 | 5163318 | Aphis gossypii 80765 | GAG|GTACTTGCAT...ATGGTTTTATTT/GTTATACTTATA...TACAG|ATG | 1 | 1 | 61.612 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);