introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
12 rows where transcript_id = 2279600
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12239791 | GT-AG | 0 | 0.0001326886575081 | 71 | rna-XM_027992800.1 2279600 | 1 | 5411560 | 5411630 | Aphis gossypii 80765 | ATT|GTAGGTTCAA...GTTGTCATAATT/CTTGTTGTCATA...TTTAG|GGC | 1 | 1 | 4.992 |
12239792 | GT-AG | 0 | 0.0240974769501287 | 738 | rna-XM_027992800.1 2279600 | 2 | 5410714 | 5411451 | Aphis gossypii 80765 | TAT|GTATATGATA...ATACCTTTAATT/TTAATTTTTATT...TACAG|ATC | 1 | 1 | 9.56 |
12239793 | GT-AG | 0 | 1.000000099473604e-05 | 1043 | rna-XM_027992800.1 2279600 | 3 | 5409520 | 5410562 | Aphis gossypii 80765 | CAG|GTTAGTAATA...TAAACATTGATT/GGTTTATTTATT...TTTAG|AGA | 2 | 1 | 15.948 |
12239794 | GT-AG | 0 | 1.2988050789773298e-05 | 477 | rna-XM_027992800.1 2279600 | 4 | 5408755 | 5409231 | Aphis gossypii 80765 | ACG|GTAAGTCTCA...GTACTTTTACCA/TGTACTTTTACC...CAAAG|GTG | 2 | 1 | 28.13 |
12239795 | GT-AG | 0 | 3.77969291839602e-05 | 515 | rna-XM_027992800.1 2279600 | 5 | 5408064 | 5408578 | Aphis gossypii 80765 | ACT|GTAAGTGCAA...ATTCCCTTAAAA/ACTACTTTCACG...TATAG|ACT | 1 | 1 | 35.575 |
12239796 | GT-AG | 0 | 9.336089219337985e-05 | 86 | rna-XM_027992800.1 2279600 | 6 | 5407891 | 5407976 | Aphis gossypii 80765 | CGC|GTAAGATTTA...CATATTTTAAAT/TTTCATTTGATC...TGTAG|ATA | 1 | 1 | 39.255 |
12239797 | GT-AG | 0 | 0.0003871548610564 | 79 | rna-XM_027992800.1 2279600 | 7 | 5407679 | 5407757 | Aphis gossypii 80765 | CAG|GTTACTTTCA...TTTTTCTTTTTT/TATATTATAATA...GCTAG|AAC | 2 | 1 | 44.882 |
12239798 | GT-AG | 0 | 1.000000099473604e-05 | 996 | rna-XM_027992800.1 2279600 | 8 | 5406453 | 5407448 | Aphis gossypii 80765 | CAG|GTAAATTGTA...ATCACATTGATT/TTATAACTAATT...TATAG|ACG | 1 | 1 | 54.611 |
12239799 | GT-AG | 0 | 1.000000099473604e-05 | 1471 | rna-XM_027992800.1 2279600 | 9 | 5404778 | 5406248 | Aphis gossypii 80765 | TAG|GTAATATACT...ATTATTTTATTT/TTTTATTTGATT...ATTAG|ATG | 1 | 1 | 63.24 |
12239800 | GT-AG | 0 | 1.000000099473604e-05 | 1471 | rna-XM_027992800.1 2279600 | 10 | 5403175 | 5404645 | Aphis gossypii 80765 | CAG|GTATTAAAAA...TTCACTGTAATT/GTACTTTTCACT...TGCAG|GTG | 1 | 1 | 68.824 |
12239801 | GT-AG | 0 | 1.000000099473604e-05 | 583 | rna-XM_027992800.1 2279600 | 11 | 5402131 | 5402713 | Aphis gossypii 80765 | CAA|GTAAGTTGAC...GAACTCATATAA/AATAAATTAATA...AACAG|GTT | 0 | 1 | 88.325 |
12239802 | GT-AG | 0 | 1.0175130008054623e-05 | 1131 | rna-XM_027992800.1 2279600 | 12 | 5400850 | 5401980 | Aphis gossypii 80765 | CAA|GTAGGTGTTA...GGAACATTAATG/GGATATGTGATT...TTCAG|GTT | 0 | 1 | 94.67 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);