home / WtMTA

introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

12 rows where transcript_id = 2279600

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
12239791 GT-AG 0 0.0001326886575081 71 rna-XM_027992800.1 2279600 1 5411560 5411630 Aphis gossypii 80765 ATT|GTAGGTTCAA...GTTGTCATAATT/CTTGTTGTCATA...TTTAG|GGC 1 1 4.992
12239792 GT-AG 0 0.0240974769501287 738 rna-XM_027992800.1 2279600 2 5410714 5411451 Aphis gossypii 80765 TAT|GTATATGATA...ATACCTTTAATT/TTAATTTTTATT...TACAG|ATC 1 1 9.56
12239793 GT-AG 0 1.000000099473604e-05 1043 rna-XM_027992800.1 2279600 3 5409520 5410562 Aphis gossypii 80765 CAG|GTTAGTAATA...TAAACATTGATT/GGTTTATTTATT...TTTAG|AGA 2 1 15.948
12239794 GT-AG 0 1.2988050789773298e-05 477 rna-XM_027992800.1 2279600 4 5408755 5409231 Aphis gossypii 80765 ACG|GTAAGTCTCA...GTACTTTTACCA/TGTACTTTTACC...CAAAG|GTG 2 1 28.13
12239795 GT-AG 0 3.77969291839602e-05 515 rna-XM_027992800.1 2279600 5 5408064 5408578 Aphis gossypii 80765 ACT|GTAAGTGCAA...ATTCCCTTAAAA/ACTACTTTCACG...TATAG|ACT 1 1 35.575
12239796 GT-AG 0 9.336089219337985e-05 86 rna-XM_027992800.1 2279600 6 5407891 5407976 Aphis gossypii 80765 CGC|GTAAGATTTA...CATATTTTAAAT/TTTCATTTGATC...TGTAG|ATA 1 1 39.255
12239797 GT-AG 0 0.0003871548610564 79 rna-XM_027992800.1 2279600 7 5407679 5407757 Aphis gossypii 80765 CAG|GTTACTTTCA...TTTTTCTTTTTT/TATATTATAATA...GCTAG|AAC 2 1 44.882
12239798 GT-AG 0 1.000000099473604e-05 996 rna-XM_027992800.1 2279600 8 5406453 5407448 Aphis gossypii 80765 CAG|GTAAATTGTA...ATCACATTGATT/TTATAACTAATT...TATAG|ACG 1 1 54.611
12239799 GT-AG 0 1.000000099473604e-05 1471 rna-XM_027992800.1 2279600 9 5404778 5406248 Aphis gossypii 80765 TAG|GTAATATACT...ATTATTTTATTT/TTTTATTTGATT...ATTAG|ATG 1 1 63.24
12239800 GT-AG 0 1.000000099473604e-05 1471 rna-XM_027992800.1 2279600 10 5403175 5404645 Aphis gossypii 80765 CAG|GTATTAAAAA...TTCACTGTAATT/GTACTTTTCACT...TGCAG|GTG 1 1 68.824
12239801 GT-AG 0 1.000000099473604e-05 583 rna-XM_027992800.1 2279600 11 5402131 5402713 Aphis gossypii 80765 CAA|GTAAGTTGAC...GAACTCATATAA/AATAAATTAATA...AACAG|GTT 0 1 88.325
12239802 GT-AG 0 1.0175130008054623e-05 1131 rna-XM_027992800.1 2279600 12 5400850 5401980 Aphis gossypii 80765 CAA|GTAGGTGTTA...GGAACATTAATG/GGATATGTGATT...TTCAG|GTT 0 1 94.67

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options:

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 41.828ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)