introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
12 rows where transcript_id = 2279599
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12239779 | GT-AG | 0 | 1.556336446573889e-05 | 15308 | rna-XM_027997653.1 2279599 | 1 | 2558410 | 2573717 | Aphis gossypii 80765 | ATG|GTAATTTAAT...TTTTTGTTATTT/TTTTTTGTTATT...TTCAG|ACA | 0 | 1 | 0.123 |
12239780 | GT-AG | 0 | 0.0001368745879696 | 8049 | rna-XM_027997653.1 2279599 | 2 | 2550270 | 2558318 | Aphis gossypii 80765 | AAA|GTAAGTTTTA...ATTTTTTTGTCA/AAAACTTTTATT...TATAG|CAA | 1 | 1 | 3.868 |
12239781 | GT-AG | 0 | 1.000000099473604e-05 | 1671 | rna-XM_027997653.1 2279599 | 3 | 2548366 | 2550036 | Aphis gossypii 80765 | AAG|GTACGTCAAT...AAATTCCTAACA/AAATTCCTAACA...TTCAG|ATT | 0 | 1 | 13.457 |
12239782 | GT-AG | 0 | 2.478091905151285e-05 | 369 | rna-XM_027997653.1 2279599 | 5 | 2546379 | 2546747 | Aphis gossypii 80765 | GAG|GTAATTATAG...TTTTTTTTATCT/TTTTTTTTTATC...TTTAG|ATT | 0 | 1 | 25.062 |
12239783 | GT-AG | 0 | 1.1684532363594689e-05 | 61 | rna-XM_027997653.1 2279599 | 6 | 2546079 | 2546139 | Aphis gossypii 80765 | GAG|GTTTGTATTA...GGTCATTTATTC/AGGTCATTTATT...AATAG|AGA | 2 | 1 | 34.897 |
12239784 | GT-AG | 0 | 6.627403157565154e-05 | 66 | rna-XM_027997653.1 2279599 | 7 | 2545822 | 2545887 | Aphis gossypii 80765 | ATG|GTAAGCATTT...TACATTTTAAAT/ATAATACTAATC...TTTAG|TTC | 1 | 1 | 42.757 |
12239785 | GT-AG | 0 | 6.910107066417873e-05 | 90 | rna-XM_027997653.1 2279599 | 8 | 2545514 | 2545603 | Aphis gossypii 80765 | AAA|GTAATTATAA...ATATCCTTACTG/TTTTTTTTTAAT...TAAAG|GTT | 0 | 1 | 51.728 |
12239786 | GT-AG | 0 | 1.000000099473604e-05 | 56 | rna-XM_027997653.1 2279599 | 9 | 2545162 | 2545217 | Aphis gossypii 80765 | TGG|GTAAGTAATG...AATATTTTAATT/AATATTTTAATT...TTTAG|GTA | 2 | 1 | 63.909 |
12239787 | GT-AG | 0 | 1.2056305619663252e-05 | 72 | rna-XM_027997653.1 2279599 | 10 | 2544942 | 2545013 | Aphis gossypii 80765 | GTC|GTAAGTAAAA...TAAGTTTTAATT/TAAGTTTTAATT...TATAG|GAC | 0 | 1 | 70.0 |
12239788 | GT-AG | 0 | 1.000000099473604e-05 | 70 | rna-XM_027997653.1 2279599 | 11 | 2544686 | 2544755 | Aphis gossypii 80765 | GAA|GTGCGTATAC...TTGATATTAACC/TTGATATTAACC...CTCAG|GTG | 0 | 1 | 77.654 |
12239789 | GT-AG | 0 | 0.0001108908410194 | 91 | rna-XM_027997653.1 2279599 | 12 | 2544472 | 2544562 | Aphis gossypii 80765 | AAG|GTATAGATAA...CTGGTCTTAAAC/CTTAAACTAATC...TGTAG|ATG | 0 | 1 | 82.716 |
12239790 | GT-AG | 0 | 0.0004720104780277 | 574 | rna-XM_027997653.1 2279599 | 13 | 2543696 | 2544269 | Aphis gossypii 80765 | ACC|GTAATTATAT...ATATTTTTATTT/TTTTATTTTATT...TTTAG|CGA | 1 | 1 | 91.029 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);