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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

14 rows where transcript_id = 2279598

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Suggested facets: score, phase, in_cds

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
12239766 GT-AG 0 1.000000099473604e-05 1400 rna-XM_027993933.1 2279598 2 1237017 1238416 Aphis gossypii 80765 TCG|GTAAGTTCTT...TATTGTTTAAAA/TATATATTCATC...CCTAG|GCT 2 1 13.792
12239767 GT-AG 0 1.000000099473604e-05 3923 rna-XM_027993933.1 2279598 3 1238515 1242437 Aphis gossypii 80765 CTG|GTAAGTACAA...TGTTTTTTATCA/CTGTTTTTTATC...TTTAG|GTA 1 1 17.515
12239768 GT-AG 0 1.000000099473604e-05 62 rna-XM_027993933.1 2279598 4 1242671 1242732 Aphis gossypii 80765 AAA|GTAATGATAT...ATTACCTTACCA/AATTACCTTACC...TCTAG|GTC 0 1 26.368
12239769 GT-AG 0 0.0010484333265144 61 rna-XM_027993933.1 2279598 5 1243030 1243090 Aphis gossypii 80765 CAG|GTACACTATA...TGATTATTAATT/TGATTATTAATT...TGTAG|GAT 0 1 37.652
12239770 GT-AG 0 6.219864156582559e-05 84 rna-XM_027993933.1 2279598 6 1243210 1243293 Aphis gossypii 80765 CAG|GTATTTAATT...TCACTCATAAAA/ATTTCACTCATA...TCTAG|GAT 2 1 42.173
12239771 GT-AG 0 1.000000099473604e-05 76 rna-XM_027993933.1 2279598 7 1243409 1243484 Aphis gossypii 80765 AGA|GTGAGTAACT...GTATATTTATAT/TGTATATTTATA...TTTAG|TTT 0 1 46.543
12239772 GT-AG 0 0.000293395489597 353 rna-XM_027993933.1 2279598 8 1243644 1243996 Aphis gossypii 80765 AAG|GTGCCCAGAT...TAATTATTAATT/ATATTATTTACT...AATAG|AAA 0 1 52.584
12239773 GT-AG 0 0.0002855509133019 64 rna-XM_027993933.1 2279598 9 1244234 1244297 Aphis gossypii 80765 AAT|GTAAGTTTAT...AATTTTTTAAAT/AATTTTTTAAAT...TTCAG|CAC 0 1 61.588
12239774 GT-AG 0 1.000000099473604e-05 55 rna-XM_027993933.1 2279598 10 1244472 1244526 Aphis gossypii 80765 CAT|GTGAGTAAAA...AAATTCTAAATA/CAAATTCTAAAT...TACAG|GAC 0 1 68.199
12239775 GT-AG 0 0.0901688551680835 187 rna-XM_027993933.1 2279598 11 1244857 1245043 Aphis gossypii 80765 AAA|GTATGTATTT...ATTCTCTTAATT/ATTCTCTTAATT...TCAAG|GTC 0 1 80.737
12239776 GT-AG 0 0.3409855481693998 69 rna-XM_027993933.1 2279598 12 1245212 1245280 Aphis gossypii 80765 AAA|GTATGTTTTA...TTATTTTTAATT/TTATTTTTAATT...TATAG|ATG 0 1 87.12
12239777 GT-AG 0 1.000000099473604e-05 78 rna-XM_027993933.1 2279598 13 1245377 1245454 Aphis gossypii 80765 AAA|GTTAGTGCAA...TTATTTTTATAA/GTTATTTTTATA...TTTAG|AAT 0 1 90.767
12239778 GT-AG 0 1.000000099473604e-05 1205 rna-XM_027993933.1 2279598 14 1245557 1246761 Aphis gossypii 80765 GAA|GTAAGTTATC...TAAGTATAAACT/TATAAACTAACA...CTTAG|GTA 0 1 94.643
12240582 GT-AG 0 4.571879598999192e-05 14418 rna-XM_027993933.1 2279598 1 1222312 1236729 Aphis gossypii 80765 TTG|GTAAGTTCTT...GATCTTTTATCG/ATTAATTTCACT...TTTAG|ATT   0 7.105

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 27.905ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)