introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
14 rows where transcript_id = 2279598
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Suggested facets: score, phase, in_cds
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12239766 | GT-AG | 0 | 1.000000099473604e-05 | 1400 | rna-XM_027993933.1 2279598 | 2 | 1237017 | 1238416 | Aphis gossypii 80765 | TCG|GTAAGTTCTT...TATTGTTTAAAA/TATATATTCATC...CCTAG|GCT | 2 | 1 | 13.792 |
12239767 | GT-AG | 0 | 1.000000099473604e-05 | 3923 | rna-XM_027993933.1 2279598 | 3 | 1238515 | 1242437 | Aphis gossypii 80765 | CTG|GTAAGTACAA...TGTTTTTTATCA/CTGTTTTTTATC...TTTAG|GTA | 1 | 1 | 17.515 |
12239768 | GT-AG | 0 | 1.000000099473604e-05 | 62 | rna-XM_027993933.1 2279598 | 4 | 1242671 | 1242732 | Aphis gossypii 80765 | AAA|GTAATGATAT...ATTACCTTACCA/AATTACCTTACC...TCTAG|GTC | 0 | 1 | 26.368 |
12239769 | GT-AG | 0 | 0.0010484333265144 | 61 | rna-XM_027993933.1 2279598 | 5 | 1243030 | 1243090 | Aphis gossypii 80765 | CAG|GTACACTATA...TGATTATTAATT/TGATTATTAATT...TGTAG|GAT | 0 | 1 | 37.652 |
12239770 | GT-AG | 0 | 6.219864156582559e-05 | 84 | rna-XM_027993933.1 2279598 | 6 | 1243210 | 1243293 | Aphis gossypii 80765 | CAG|GTATTTAATT...TCACTCATAAAA/ATTTCACTCATA...TCTAG|GAT | 2 | 1 | 42.173 |
12239771 | GT-AG | 0 | 1.000000099473604e-05 | 76 | rna-XM_027993933.1 2279598 | 7 | 1243409 | 1243484 | Aphis gossypii 80765 | AGA|GTGAGTAACT...GTATATTTATAT/TGTATATTTATA...TTTAG|TTT | 0 | 1 | 46.543 |
12239772 | GT-AG | 0 | 0.000293395489597 | 353 | rna-XM_027993933.1 2279598 | 8 | 1243644 | 1243996 | Aphis gossypii 80765 | AAG|GTGCCCAGAT...TAATTATTAATT/ATATTATTTACT...AATAG|AAA | 0 | 1 | 52.584 |
12239773 | GT-AG | 0 | 0.0002855509133019 | 64 | rna-XM_027993933.1 2279598 | 9 | 1244234 | 1244297 | Aphis gossypii 80765 | AAT|GTAAGTTTAT...AATTTTTTAAAT/AATTTTTTAAAT...TTCAG|CAC | 0 | 1 | 61.588 |
12239774 | GT-AG | 0 | 1.000000099473604e-05 | 55 | rna-XM_027993933.1 2279598 | 10 | 1244472 | 1244526 | Aphis gossypii 80765 | CAT|GTGAGTAAAA...AAATTCTAAATA/CAAATTCTAAAT...TACAG|GAC | 0 | 1 | 68.199 |
12239775 | GT-AG | 0 | 0.0901688551680835 | 187 | rna-XM_027993933.1 2279598 | 11 | 1244857 | 1245043 | Aphis gossypii 80765 | AAA|GTATGTATTT...ATTCTCTTAATT/ATTCTCTTAATT...TCAAG|GTC | 0 | 1 | 80.737 |
12239776 | GT-AG | 0 | 0.3409855481693998 | 69 | rna-XM_027993933.1 2279598 | 12 | 1245212 | 1245280 | Aphis gossypii 80765 | AAA|GTATGTTTTA...TTATTTTTAATT/TTATTTTTAATT...TATAG|ATG | 0 | 1 | 87.12 |
12239777 | GT-AG | 0 | 1.000000099473604e-05 | 78 | rna-XM_027993933.1 2279598 | 13 | 1245377 | 1245454 | Aphis gossypii 80765 | AAA|GTTAGTGCAA...TTATTTTTATAA/GTTATTTTTATA...TTTAG|AAT | 0 | 1 | 90.767 |
12239778 | GT-AG | 0 | 1.000000099473604e-05 | 1205 | rna-XM_027993933.1 2279598 | 14 | 1245557 | 1246761 | Aphis gossypii 80765 | GAA|GTAAGTTATC...TAAGTATAAACT/TATAAACTAACA...CTTAG|GTA | 0 | 1 | 94.643 |
12240582 | GT-AG | 0 | 4.571879598999192e-05 | 14418 | rna-XM_027993933.1 2279598 | 1 | 1222312 | 1236729 | Aphis gossypii 80765 | TTG|GTAAGTTCTT...GATCTTTTATCG/ATTAATTTCACT...TTTAG|ATT | 0 | 7.105 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);