introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
8 rows where transcript_id = 2279597
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12239758 | GT-AG | 0 | 1.000000099473604e-05 | 62 | rna-XM_027998490.1 2279597 | 2 | 3578919 | 3578980 | Aphis gossypii 80765 | CTG|GTAATAAAAT...ATTATTGTAACT/ATTATTGTAACT...TTCAG|TTT | 1 | 1 | 13.994 |
12239759 | GT-AG | 0 | 1.000000099473604e-05 | 87 | rna-XM_027998490.1 2279597 | 3 | 3578669 | 3578755 | Aphis gossypii 80765 | AGG|GTAAGAATAT...GTTCTTTTATAA/TAATTTATGATT...TTTAG|TTA | 2 | 1 | 20.645 |
12239760 | GT-AG | 0 | 1.000000099473604e-05 | 73 | rna-XM_027998490.1 2279597 | 4 | 3577905 | 3577977 | Aphis gossypii 80765 | GAG|GTTAGTTAAC...TTATTATTAACC/CATGTATTTATT...TTTAG|ATT | 0 | 1 | 48.837 |
12239761 | GT-AG | 0 | 1.000000099473604e-05 | 263 | rna-XM_027998490.1 2279597 | 5 | 3577303 | 3577565 | Aphis gossypii 80765 | CAG|GTAATATAGA...AATTACTTAATT/TAATTACTTAAT...CACAG|GGT | 0 | 1 | 62.668 |
12239762 | GT-AG | 0 | 0.0027166664668601 | 67 | rna-XM_027998490.1 2279597 | 6 | 3577001 | 3577067 | Aphis gossypii 80765 | CTG|GTATGTATTA...TCAATTTTAATA/ATTTTATTCAAT...TCTAG|GGA | 1 | 1 | 72.256 |
12239763 | GT-AG | 0 | 0.0011830134027026 | 63 | rna-XM_027998490.1 2279597 | 7 | 3576573 | 3576635 | Aphis gossypii 80765 | CCA|GTAAGCTATT...CATGCCTAAATT/AATATATTAACA...TTTAG|TTG | 0 | 1 | 87.148 |
12239764 | GT-AG | 0 | 0.0932151390620114 | 1270 | rna-XM_027998490.1 2279597 | 8 | 3575188 | 3576457 | Aphis gossypii 80765 | GTT|GTATGTATAC...TAATTTTTAAAT/ATTATTTTGAAT...TTTAG|ATA | 1 | 1 | 91.84 |
12239765 | GT-AG | 0 | 7.226722327264684e-05 | 864 | rna-XM_027998490.1 2279597 | 9 | 3574178 | 3575041 | Aphis gossypii 80765 | ACG|GTAACACATT...TTTTTTTTATAT/TTTTTTTTTATA...TTTAG|GGC | 0 | 1 | 97.797 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);