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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 2279597

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
12239758 GT-AG 0 1.000000099473604e-05 62 rna-XM_027998490.1 2279597 2 3578919 3578980 Aphis gossypii 80765 CTG|GTAATAAAAT...ATTATTGTAACT/ATTATTGTAACT...TTCAG|TTT 1 1 13.994
12239759 GT-AG 0 1.000000099473604e-05 87 rna-XM_027998490.1 2279597 3 3578669 3578755 Aphis gossypii 80765 AGG|GTAAGAATAT...GTTCTTTTATAA/TAATTTATGATT...TTTAG|TTA 2 1 20.645
12239760 GT-AG 0 1.000000099473604e-05 73 rna-XM_027998490.1 2279597 4 3577905 3577977 Aphis gossypii 80765 GAG|GTTAGTTAAC...TTATTATTAACC/CATGTATTTATT...TTTAG|ATT 0 1 48.837
12239761 GT-AG 0 1.000000099473604e-05 263 rna-XM_027998490.1 2279597 5 3577303 3577565 Aphis gossypii 80765 CAG|GTAATATAGA...AATTACTTAATT/TAATTACTTAAT...CACAG|GGT 0 1 62.668
12239762 GT-AG 0 0.0027166664668601 67 rna-XM_027998490.1 2279597 6 3577001 3577067 Aphis gossypii 80765 CTG|GTATGTATTA...TCAATTTTAATA/ATTTTATTCAAT...TCTAG|GGA 1 1 72.256
12239763 GT-AG 0 0.0011830134027026 63 rna-XM_027998490.1 2279597 7 3576573 3576635 Aphis gossypii 80765 CCA|GTAAGCTATT...CATGCCTAAATT/AATATATTAACA...TTTAG|TTG 0 1 87.148
12239764 GT-AG 0 0.0932151390620114 1270 rna-XM_027998490.1 2279597 8 3575188 3576457 Aphis gossypii 80765 GTT|GTATGTATAC...TAATTTTTAAAT/ATTATTTTGAAT...TTTAG|ATA 1 1 91.84
12239765 GT-AG 0 7.226722327264684e-05 864 rna-XM_027998490.1 2279597 9 3574178 3575041 Aphis gossypii 80765 ACG|GTAACACATT...TTTTTTTTATAT/TTTTTTTTTATA...TTTAG|GGC 0 1 97.797

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 23.995ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)