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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

14 rows where transcript_id = 2279594

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Suggested facets: dinucleotide_pair, score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
12239720 GT-AG 0 0.0003327216392848 409 rna-XM_027997661.1 2279594 1 1866517 1866925 Aphis gossypii 80765 ACT|GTAAGCACTT...TAATACTTACCT/ATAATACTTACC...CATAG|AGC 0 1 2.002
12239721 GT-AG 0 1.000000099473604e-05 76 rna-XM_027997661.1 2279594 2 1867258 1867333 Aphis gossypii 80765 AAT|GTAAGGAATA...TACCTATTAATT/AAGTATTTTATA...TTTAG|TGA 2 1 14.312
12239722 GT-AG 0 1.000000099473604e-05 257 rna-XM_027997661.1 2279594 3 1867500 1867756 Aphis gossypii 80765 CAA|GTAATACACA...ACAGCTTTATTT/TTTATTTTTATA...ATTAG|GCT 0 1 20.467
12239723 GT-AG 0 0.0028759857851343 58 rna-XM_027997661.1 2279594 4 1867921 1867978 Aphis gossypii 80765 CAA|GTATTTAAAT...TTCATTTTGACA/CTTTTACTTATT...TATAG|AGA 2 1 26.548
12239724 GT-AG 0 0.0002274925869595 80 rna-XM_027997661.1 2279594 5 1868094 1868173 Aphis gossypii 80765 GAA|GTAAGTATTA...TAACCTTTGACA/TTCATATTCATT...TTAAG|AAA 0 1 30.812
12239725 GT-AG 0 1.000000099473604e-05 178 rna-XM_027997661.1 2279594 6 1868432 1868609 Aphis gossypii 80765 ATT|GTAAGTAAAC...ATAATGTTAGTT/TTGTACTTCATT...TTTAG|GTG 0 1 40.378
12239726 GT-AG 0 1.000000099473604e-05 78 rna-XM_027997661.1 2279594 7 1868732 1868809 Aphis gossypii 80765 AAG|GTAAATATTT...TACATTTTAAAA/TATGTTATAATA...TTTAG|ACC 2 1 44.902
12239727 GT-AG 0 1.7146138195949548e-05 938 rna-XM_027997661.1 2279594 8 1868871 1869808 Aphis gossypii 80765 GAA|GTAAGTATTT...TTTTTATTATAT/ATTTTTATTATA...TGTAG|AGA 0 1 47.164
12239728 GT-AG 0 1.000000099473604e-05 98 rna-XM_027997661.1 2279594 9 1869931 1870028 Aphis gossypii 80765 CAT|GTAAGGGAGC...TTATTCTTATGT/TAATTATTCATA...TTAAG|GAG 2 1 51.687
12239729 GT-AG 0 7.523046310033772e-05 74 rna-XM_027997661.1 2279594 10 1870207 1870280 Aphis gossypii 80765 TCA|GTAAATAATA...TTAATTTTAAAA/TTTAAATTAATT...TTTAG|AGT 0 1 58.287
12239730 GT-AG 0 1.000000099473604e-05 621 rna-XM_027997661.1 2279594 11 1870502 1871122 Aphis gossypii 80765 TAA|GTAAGAAATA...TAAAATTTAATA/TAAAATTTAATA...TTTAG|ACA 2 1 66.481
12239731 GC-AG 0 1.000000099473604e-05 87 rna-XM_027997661.1 2279594 12 1871310 1871396 Aphis gossypii 80765 ATG|GCAAGTTTAT...TTATTTTTATTT/TTTATTTTTATT...TATAG|GAA 0 1 73.415
12239732 GT-AG 0 1.000000099473604e-05 1055 rna-XM_027997661.1 2279594 13 1871583 1872637 Aphis gossypii 80765 GAA|GTAAGTATTG...AATTTTTTGTTT/TTTTTGTTTATA...TTTAG|GTA 0 1 80.311
12239733 GT-AG 0 1.797489725973745e-05 57 rna-XM_027997661.1 2279594 14 1872992 1873048 Aphis gossypii 80765 AAG|GTAAACACAA...AAATTTTTAATT/AAATTTTTAATT...TATAG|GAA 0 1 93.437

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 23.73ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)