introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
14 rows where transcript_id = 2279594
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Suggested facets: dinucleotide_pair, score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12239720 | GT-AG | 0 | 0.0003327216392848 | 409 | rna-XM_027997661.1 2279594 | 1 | 1866517 | 1866925 | Aphis gossypii 80765 | ACT|GTAAGCACTT...TAATACTTACCT/ATAATACTTACC...CATAG|AGC | 0 | 1 | 2.002 |
12239721 | GT-AG | 0 | 1.000000099473604e-05 | 76 | rna-XM_027997661.1 2279594 | 2 | 1867258 | 1867333 | Aphis gossypii 80765 | AAT|GTAAGGAATA...TACCTATTAATT/AAGTATTTTATA...TTTAG|TGA | 2 | 1 | 14.312 |
12239722 | GT-AG | 0 | 1.000000099473604e-05 | 257 | rna-XM_027997661.1 2279594 | 3 | 1867500 | 1867756 | Aphis gossypii 80765 | CAA|GTAATACACA...ACAGCTTTATTT/TTTATTTTTATA...ATTAG|GCT | 0 | 1 | 20.467 |
12239723 | GT-AG | 0 | 0.0028759857851343 | 58 | rna-XM_027997661.1 2279594 | 4 | 1867921 | 1867978 | Aphis gossypii 80765 | CAA|GTATTTAAAT...TTCATTTTGACA/CTTTTACTTATT...TATAG|AGA | 2 | 1 | 26.548 |
12239724 | GT-AG | 0 | 0.0002274925869595 | 80 | rna-XM_027997661.1 2279594 | 5 | 1868094 | 1868173 | Aphis gossypii 80765 | GAA|GTAAGTATTA...TAACCTTTGACA/TTCATATTCATT...TTAAG|AAA | 0 | 1 | 30.812 |
12239725 | GT-AG | 0 | 1.000000099473604e-05 | 178 | rna-XM_027997661.1 2279594 | 6 | 1868432 | 1868609 | Aphis gossypii 80765 | ATT|GTAAGTAAAC...ATAATGTTAGTT/TTGTACTTCATT...TTTAG|GTG | 0 | 1 | 40.378 |
12239726 | GT-AG | 0 | 1.000000099473604e-05 | 78 | rna-XM_027997661.1 2279594 | 7 | 1868732 | 1868809 | Aphis gossypii 80765 | AAG|GTAAATATTT...TACATTTTAAAA/TATGTTATAATA...TTTAG|ACC | 2 | 1 | 44.902 |
12239727 | GT-AG | 0 | 1.7146138195949548e-05 | 938 | rna-XM_027997661.1 2279594 | 8 | 1868871 | 1869808 | Aphis gossypii 80765 | GAA|GTAAGTATTT...TTTTTATTATAT/ATTTTTATTATA...TGTAG|AGA | 0 | 1 | 47.164 |
12239728 | GT-AG | 0 | 1.000000099473604e-05 | 98 | rna-XM_027997661.1 2279594 | 9 | 1869931 | 1870028 | Aphis gossypii 80765 | CAT|GTAAGGGAGC...TTATTCTTATGT/TAATTATTCATA...TTAAG|GAG | 2 | 1 | 51.687 |
12239729 | GT-AG | 0 | 7.523046310033772e-05 | 74 | rna-XM_027997661.1 2279594 | 10 | 1870207 | 1870280 | Aphis gossypii 80765 | TCA|GTAAATAATA...TTAATTTTAAAA/TTTAAATTAATT...TTTAG|AGT | 0 | 1 | 58.287 |
12239730 | GT-AG | 0 | 1.000000099473604e-05 | 621 | rna-XM_027997661.1 2279594 | 11 | 1870502 | 1871122 | Aphis gossypii 80765 | TAA|GTAAGAAATA...TAAAATTTAATA/TAAAATTTAATA...TTTAG|ACA | 2 | 1 | 66.481 |
12239731 | GC-AG | 0 | 1.000000099473604e-05 | 87 | rna-XM_027997661.1 2279594 | 12 | 1871310 | 1871396 | Aphis gossypii 80765 | ATG|GCAAGTTTAT...TTATTTTTATTT/TTTATTTTTATT...TATAG|GAA | 0 | 1 | 73.415 |
12239732 | GT-AG | 0 | 1.000000099473604e-05 | 1055 | rna-XM_027997661.1 2279594 | 13 | 1871583 | 1872637 | Aphis gossypii 80765 | GAA|GTAAGTATTG...AATTTTTTGTTT/TTTTTGTTTATA...TTTAG|GTA | 0 | 1 | 80.311 |
12239733 | GT-AG | 0 | 1.797489725973745e-05 | 57 | rna-XM_027997661.1 2279594 | 14 | 1872992 | 1873048 | Aphis gossypii 80765 | AAG|GTAAACACAA...AAATTTTTAATT/AAATTTTTAATT...TATAG|GAA | 0 | 1 | 93.437 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);