introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
15 rows where transcript_id = 2279593
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12239705 | GT-AG | 0 | 2.901262690273501e-05 | 2246 | rna-XM_027993749.1 2279593 | 1 | 5452778 | 5455023 | Aphis gossypii 80765 | CTG|GTAAGCATTA...ATGTACTTAAAC/ATAAATATCATT...TTCAG|GAA | 2 | 1 | 3.389 |
12239706 | GT-AG | 0 | 1.000000099473604e-05 | 56 | rna-XM_027993749.1 2279593 | 2 | 5455140 | 5455195 | Aphis gossypii 80765 | CTG|GTAAGTAATA...TATTTATTAATA/TATGTATTTATT...TTTAG|GTG | 1 | 1 | 7.661 |
12239707 | GT-AG | 0 | 6.762582727363133e-05 | 63 | rna-XM_027993749.1 2279593 | 3 | 5455518 | 5455580 | Aphis gossypii 80765 | TCG|GTACTGTAAT...TGTATTTTAAAT/TGTATTTTAAAT...TTTAG|TTG | 2 | 1 | 19.521 |
12239708 | GT-AG | 0 | 0.0091127414709342 | 867 | rna-XM_027993749.1 2279593 | 4 | 5455879 | 5456745 | Aphis gossypii 80765 | CAA|GTATGTATTA...AATCTTTTAATA/TTATTATTAATA...TTTAG|GAT | 0 | 1 | 30.497 |
12239709 | GT-AG | 0 | 1.000000099473604e-05 | 1859 | rna-XM_027993749.1 2279593 | 5 | 5456948 | 5458806 | Aphis gossypii 80765 | CAG|GTAATTCAAT...TATATTTTATTT/TTTTATTTTATA...ATTAG|GTT | 1 | 1 | 37.937 |
12239710 | GT-AG | 0 | 1.000000099473604e-05 | 96 | rna-XM_027993749.1 2279593 | 6 | 5458924 | 5459019 | Aphis gossypii 80765 | AAT|GTAAGTAATT...TTATGTTTAAAT/AATATATTTATA...TCAAG|CAT | 1 | 1 | 42.247 |
12239711 | GT-AG | 0 | 1.000000099473604e-05 | 176 | rna-XM_027993749.1 2279593 | 7 | 5459044 | 5459219 | Aphis gossypii 80765 | CAA|GTGAGTGATG...ATTACGTTATTT/ATGTTTATTATT...TGTAG|CTG | 1 | 1 | 43.131 |
12239712 | GT-AG | 0 | 1.0430961694426876e-05 | 68 | rna-XM_027993749.1 2279593 | 8 | 5459402 | 5459469 | Aphis gossypii 80765 | AAA|GTAATTAAAC...AATACTTTAGTG/TTTTTTCTAATA...TTTAG|ATA | 0 | 1 | 49.834 |
12239713 | GT-AG | 0 | 0.0002125298147029 | 60 | rna-XM_027993749.1 2279593 | 9 | 5459644 | 5459703 | Aphis gossypii 80765 | AAA|GTAATTATTT...TTATTTTTAATC/TTATTTTTAATC...TTTAG|GAT | 0 | 1 | 56.243 |
12239714 | GT-AG | 0 | 0.0112975524809097 | 99 | rna-XM_027993749.1 2279593 | 10 | 5459759 | 5459857 | Aphis gossypii 80765 | AAA|GTATGTAACT...TAATTCTTGATT/ATTTTGTTAATT...TTTAG|ATG | 1 | 1 | 58.269 |
12239715 | GT-AG | 0 | 1.000000099473604e-05 | 60 | rna-XM_027993749.1 2279593 | 11 | 5460085 | 5460144 | Aphis gossypii 80765 | AAG|GTTAAACATT...AATACTTTTACA/AAATTATTTATA...CTTAG|GAG | 0 | 1 | 66.63 |
12239716 | GT-AG | 0 | 0.1011645802389069 | 50 | rna-XM_027993749.1 2279593 | 12 | 5460338 | 5460387 | Aphis gossypii 80765 | AAA|GTATGTTGCA...TTGTCTTTAACT/TTGTCTTTAACT...TTTAG|GTG | 1 | 1 | 73.738 |
12239717 | GT-AG | 0 | 0.0289837271204186 | 68 | rna-XM_027993749.1 2279593 | 13 | 5460586 | 5460653 | Aphis gossypii 80765 | CAG|GTATCATGAA...ATTTATTTAATA/CTGTAATTTATT...TTCAG|ATT | 1 | 1 | 81.031 |
12239718 | GT-AG | 0 | 3.1258568690019e-05 | 95 | rna-XM_027993749.1 2279593 | 14 | 5460783 | 5460877 | Aphis gossypii 80765 | TAA|GTAAGTTATA...TATACTGTAATC/TTAGTATTTAAA...TTCAG|TGG | 1 | 1 | 85.783 |
12239719 | GT-AG | 0 | 8.199846146732212e-05 | 72 | rna-XM_027993749.1 2279593 | 15 | 5461103 | 5461174 | Aphis gossypii 80765 | TAG|GTAATTTTAT...TTATTTTTAGAT/ATGCTATTCATT...TTTAG|ATC | 1 | 1 | 94.07 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);