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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

15 rows where transcript_id = 2279593

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id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
12239705 GT-AG 0 2.901262690273501e-05 2246 rna-XM_027993749.1 2279593 1 5452778 5455023 Aphis gossypii 80765 CTG|GTAAGCATTA...ATGTACTTAAAC/ATAAATATCATT...TTCAG|GAA 2 1 3.389
12239706 GT-AG 0 1.000000099473604e-05 56 rna-XM_027993749.1 2279593 2 5455140 5455195 Aphis gossypii 80765 CTG|GTAAGTAATA...TATTTATTAATA/TATGTATTTATT...TTTAG|GTG 1 1 7.661
12239707 GT-AG 0 6.762582727363133e-05 63 rna-XM_027993749.1 2279593 3 5455518 5455580 Aphis gossypii 80765 TCG|GTACTGTAAT...TGTATTTTAAAT/TGTATTTTAAAT...TTTAG|TTG 2 1 19.521
12239708 GT-AG 0 0.0091127414709342 867 rna-XM_027993749.1 2279593 4 5455879 5456745 Aphis gossypii 80765 CAA|GTATGTATTA...AATCTTTTAATA/TTATTATTAATA...TTTAG|GAT 0 1 30.497
12239709 GT-AG 0 1.000000099473604e-05 1859 rna-XM_027993749.1 2279593 5 5456948 5458806 Aphis gossypii 80765 CAG|GTAATTCAAT...TATATTTTATTT/TTTTATTTTATA...ATTAG|GTT 1 1 37.937
12239710 GT-AG 0 1.000000099473604e-05 96 rna-XM_027993749.1 2279593 6 5458924 5459019 Aphis gossypii 80765 AAT|GTAAGTAATT...TTATGTTTAAAT/AATATATTTATA...TCAAG|CAT 1 1 42.247
12239711 GT-AG 0 1.000000099473604e-05 176 rna-XM_027993749.1 2279593 7 5459044 5459219 Aphis gossypii 80765 CAA|GTGAGTGATG...ATTACGTTATTT/ATGTTTATTATT...TGTAG|CTG 1 1 43.131
12239712 GT-AG 0 1.0430961694426876e-05 68 rna-XM_027993749.1 2279593 8 5459402 5459469 Aphis gossypii 80765 AAA|GTAATTAAAC...AATACTTTAGTG/TTTTTTCTAATA...TTTAG|ATA 0 1 49.834
12239713 GT-AG 0 0.0002125298147029 60 rna-XM_027993749.1 2279593 9 5459644 5459703 Aphis gossypii 80765 AAA|GTAATTATTT...TTATTTTTAATC/TTATTTTTAATC...TTTAG|GAT 0 1 56.243
12239714 GT-AG 0 0.0112975524809097 99 rna-XM_027993749.1 2279593 10 5459759 5459857 Aphis gossypii 80765 AAA|GTATGTAACT...TAATTCTTGATT/ATTTTGTTAATT...TTTAG|ATG 1 1 58.269
12239715 GT-AG 0 1.000000099473604e-05 60 rna-XM_027993749.1 2279593 11 5460085 5460144 Aphis gossypii 80765 AAG|GTTAAACATT...AATACTTTTACA/AAATTATTTATA...CTTAG|GAG 0 1 66.63
12239716 GT-AG 0 0.1011645802389069 50 rna-XM_027993749.1 2279593 12 5460338 5460387 Aphis gossypii 80765 AAA|GTATGTTGCA...TTGTCTTTAACT/TTGTCTTTAACT...TTTAG|GTG 1 1 73.738
12239717 GT-AG 0 0.0289837271204186 68 rna-XM_027993749.1 2279593 13 5460586 5460653 Aphis gossypii 80765 CAG|GTATCATGAA...ATTTATTTAATA/CTGTAATTTATT...TTCAG|ATT 1 1 81.031
12239718 GT-AG 0 3.1258568690019e-05 95 rna-XM_027993749.1 2279593 14 5460783 5460877 Aphis gossypii 80765 TAA|GTAAGTTATA...TATACTGTAATC/TTAGTATTTAAA...TTCAG|TGG 1 1 85.783
12239719 GT-AG 0 8.199846146732212e-05 72 rna-XM_027993749.1 2279593 15 5461103 5461174 Aphis gossypii 80765 TAG|GTAATTTTAT...TTATTTTTAGAT/ATGCTATTCATT...TTTAG|ATC 1 1 94.07

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 26.296ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)