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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

20 rows where transcript_id = 2279589

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
12239648 GT-AG 0 2.628371116582531e-05 8119 rna-XM_027982908.1 2279589 1 4335378 4343496 Aphis gossypii 80765 CAG|GTATAGCGTA...CGTCCGTTAGCC/AAACAAATAACA...AACAG|GAG 0 1 0.566
12239649 GT-AG 0 1.108017619412911e-05 3426 rna-XM_027982908.1 2279589 2 4343744 4347169 Aphis gossypii 80765 AAG|GTAAGCATTT...TAATATTTATTT/ATAATATTTATT...TATAG|GTA 1 1 8.333
12239650 GT-AG 0 6.851282769969335e-05 136 rna-XM_027982908.1 2279589 3 4347366 4347501 Aphis gossypii 80765 AAA|GTAAGTTTCA...TGATTATTGATA/TGATTATTGATA...TACAG|AGG 2 1 14.497
12239651 GT-AG 0 1.000000099473604e-05 943 rna-XM_027982908.1 2279589 4 4347614 4348556 Aphis gossypii 80765 GAG|GTTAGTTTTA...CAATTCTTAATA/TATTGTTTAACA...TTTAG|AAA 0 1 18.019
12239652 GT-AG 0 1.000000099473604e-05 53 rna-XM_027982908.1 2279589 5 4348724 4348776 Aphis gossypii 80765 AAG|GTAAGGTGCA...ATTTTTTTATTA/TATTTTTTTATT...TTTAG|GGA 2 1 23.27
12239653 GT-AG 0 0.0027324001750898 61 rna-XM_027982908.1 2279589 6 4348933 4348993 Aphis gossypii 80765 TAT|GTTTGTATTT...TATTTTTTATCT/TTATTATTTATT...TTTAG|TGA 2 1 28.176
12239654 GT-AG 0 1.000000099473604e-05 2875 rna-XM_027982908.1 2279589 7 4349137 4352011 Aphis gossypii 80765 CAG|GTTAGTTAGT...TTTTCTTTACTA/ATTTTCTTTACT...TAAAG|ATG 1 1 32.673
12239655 GT-AG 0 1.0285123578163004e-05 67 rna-XM_027982908.1 2279589 8 4352102 4352168 Aphis gossypii 80765 CTA|GTAAGTAAAT...AATGTTTTAATG/AATGTTTTAATG...TTTAG|CTC 1 1 35.503
12239656 GT-AG 0 0.0001351461069725 61 rna-XM_027982908.1 2279589 9 4352315 4352375 Aphis gossypii 80765 AAT|GTAAAGTTGC...ACATTTTTAATT/ACATTTTTAATT...TGTAG|AAT 0 1 40.094
12239657 GT-AG 0 1.000000099473604e-05 86 rna-XM_027982908.1 2279589 10 4352647 4352732 Aphis gossypii 80765 ATA|GTAAGATATA...TTTATTTTATTA/CATTTATTTATT...TGTAG|AAA 1 1 48.616
12239658 GT-AG 0 0.008343408678761 77 rna-XM_027982908.1 2279589 11 4352952 4353028 Aphis gossypii 80765 TAG|GTAACTTTTT...TATACATTATAT/TTGTAGTTAATT...AATAG|AAG 1 1 55.503
12239659 GT-AG 0 1.000000099473604e-05 68 rna-XM_027982908.1 2279589 12 4353172 4353239 Aphis gossypii 80765 AAG|GTAAGTGAGA...AGATTTTTGAAC/AGATTTTTGAAC...ATTAG|ATG 0 1 60.0
12239660 GT-AG 0 0.0028736417321909 103 rna-XM_027982908.1 2279589 13 4353318 4353420 Aphis gossypii 80765 CAG|GTATTGTTTT...GTAATTTTGATA/GTAATTTTGATA...TACAG|ATG 0 1 62.453
12239661 GT-AG 0 0.0032585253290321 188 rna-XM_027982908.1 2279589 14 4353485 4353672 Aphis gossypii 80765 ACG|GTATGTACTT...TTTGTTTTATTT/TTTTGTTTTATT...AACAG|TAG 1 1 64.465
12239662 GT-AG 0 3.133332189602654e-05 959 rna-XM_027982908.1 2279589 15 4353768 4354726 Aphis gossypii 80765 CAG|GTAAATTAAA...TTATTTTTAATT/TTATTTTTAATT...TTTAG|ATT 0 1 67.453
12239663 GT-AG 0 0.0018527060704631 62 rna-XM_027982908.1 2279589 16 4354935 4354996 Aphis gossypii 80765 TGG|GTATAATATT...TATATTTTAGTA/TTATATTTTAGT...TATAG|GAA 1 1 73.994
12239664 GT-AG 0 0.0115619783420493 78 rna-XM_027982908.1 2279589 17 4355120 4355197 Aphis gossypii 80765 GCA|GTATGTGTTT...TATATTTTATAC/TATATATTTATA...TTTAG|ATG 1 1 77.862
12239665 GT-AG 0 0.0224610890289061 58 rna-XM_027982908.1 2279589 18 4355317 4355374 Aphis gossypii 80765 AAT|GTATGCATAA...TTATATTTATTT/ATTATATTTATT...ATTAG|GTT 0 1 81.604
12239666 GT-AG 0 1.000000099473604e-05 420 rna-XM_027982908.1 2279589 19 4355538 4355957 Aphis gossypii 80765 CTG|GTTAGATATC...TTTACTTTAATT/TTATTTTTTACT...TTTAG|TTA 1 1 86.73
12239667 GT-AG 0 0.0008480561986456 180 rna-XM_027982908.1 2279589 20 4356177 4356356 Aphis gossypii 80765 GCA|GTAAGTTTTA...ATGTTTGTAATT/ATGTTTGTAATT...TATAG|ATA 1 1 93.616

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 45.392ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)