introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
20 rows where transcript_id = 2279589
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12239648 | GT-AG | 0 | 2.628371116582531e-05 | 8119 | rna-XM_027982908.1 2279589 | 1 | 4335378 | 4343496 | Aphis gossypii 80765 | CAG|GTATAGCGTA...CGTCCGTTAGCC/AAACAAATAACA...AACAG|GAG | 0 | 1 | 0.566 |
12239649 | GT-AG | 0 | 1.108017619412911e-05 | 3426 | rna-XM_027982908.1 2279589 | 2 | 4343744 | 4347169 | Aphis gossypii 80765 | AAG|GTAAGCATTT...TAATATTTATTT/ATAATATTTATT...TATAG|GTA | 1 | 1 | 8.333 |
12239650 | GT-AG | 0 | 6.851282769969335e-05 | 136 | rna-XM_027982908.1 2279589 | 3 | 4347366 | 4347501 | Aphis gossypii 80765 | AAA|GTAAGTTTCA...TGATTATTGATA/TGATTATTGATA...TACAG|AGG | 2 | 1 | 14.497 |
12239651 | GT-AG | 0 | 1.000000099473604e-05 | 943 | rna-XM_027982908.1 2279589 | 4 | 4347614 | 4348556 | Aphis gossypii 80765 | GAG|GTTAGTTTTA...CAATTCTTAATA/TATTGTTTAACA...TTTAG|AAA | 0 | 1 | 18.019 |
12239652 | GT-AG | 0 | 1.000000099473604e-05 | 53 | rna-XM_027982908.1 2279589 | 5 | 4348724 | 4348776 | Aphis gossypii 80765 | AAG|GTAAGGTGCA...ATTTTTTTATTA/TATTTTTTTATT...TTTAG|GGA | 2 | 1 | 23.27 |
12239653 | GT-AG | 0 | 0.0027324001750898 | 61 | rna-XM_027982908.1 2279589 | 6 | 4348933 | 4348993 | Aphis gossypii 80765 | TAT|GTTTGTATTT...TATTTTTTATCT/TTATTATTTATT...TTTAG|TGA | 2 | 1 | 28.176 |
12239654 | GT-AG | 0 | 1.000000099473604e-05 | 2875 | rna-XM_027982908.1 2279589 | 7 | 4349137 | 4352011 | Aphis gossypii 80765 | CAG|GTTAGTTAGT...TTTTCTTTACTA/ATTTTCTTTACT...TAAAG|ATG | 1 | 1 | 32.673 |
12239655 | GT-AG | 0 | 1.0285123578163004e-05 | 67 | rna-XM_027982908.1 2279589 | 8 | 4352102 | 4352168 | Aphis gossypii 80765 | CTA|GTAAGTAAAT...AATGTTTTAATG/AATGTTTTAATG...TTTAG|CTC | 1 | 1 | 35.503 |
12239656 | GT-AG | 0 | 0.0001351461069725 | 61 | rna-XM_027982908.1 2279589 | 9 | 4352315 | 4352375 | Aphis gossypii 80765 | AAT|GTAAAGTTGC...ACATTTTTAATT/ACATTTTTAATT...TGTAG|AAT | 0 | 1 | 40.094 |
12239657 | GT-AG | 0 | 1.000000099473604e-05 | 86 | rna-XM_027982908.1 2279589 | 10 | 4352647 | 4352732 | Aphis gossypii 80765 | ATA|GTAAGATATA...TTTATTTTATTA/CATTTATTTATT...TGTAG|AAA | 1 | 1 | 48.616 |
12239658 | GT-AG | 0 | 0.008343408678761 | 77 | rna-XM_027982908.1 2279589 | 11 | 4352952 | 4353028 | Aphis gossypii 80765 | TAG|GTAACTTTTT...TATACATTATAT/TTGTAGTTAATT...AATAG|AAG | 1 | 1 | 55.503 |
12239659 | GT-AG | 0 | 1.000000099473604e-05 | 68 | rna-XM_027982908.1 2279589 | 12 | 4353172 | 4353239 | Aphis gossypii 80765 | AAG|GTAAGTGAGA...AGATTTTTGAAC/AGATTTTTGAAC...ATTAG|ATG | 0 | 1 | 60.0 |
12239660 | GT-AG | 0 | 0.0028736417321909 | 103 | rna-XM_027982908.1 2279589 | 13 | 4353318 | 4353420 | Aphis gossypii 80765 | CAG|GTATTGTTTT...GTAATTTTGATA/GTAATTTTGATA...TACAG|ATG | 0 | 1 | 62.453 |
12239661 | GT-AG | 0 | 0.0032585253290321 | 188 | rna-XM_027982908.1 2279589 | 14 | 4353485 | 4353672 | Aphis gossypii 80765 | ACG|GTATGTACTT...TTTGTTTTATTT/TTTTGTTTTATT...AACAG|TAG | 1 | 1 | 64.465 |
12239662 | GT-AG | 0 | 3.133332189602654e-05 | 959 | rna-XM_027982908.1 2279589 | 15 | 4353768 | 4354726 | Aphis gossypii 80765 | CAG|GTAAATTAAA...TTATTTTTAATT/TTATTTTTAATT...TTTAG|ATT | 0 | 1 | 67.453 |
12239663 | GT-AG | 0 | 0.0018527060704631 | 62 | rna-XM_027982908.1 2279589 | 16 | 4354935 | 4354996 | Aphis gossypii 80765 | TGG|GTATAATATT...TATATTTTAGTA/TTATATTTTAGT...TATAG|GAA | 1 | 1 | 73.994 |
12239664 | GT-AG | 0 | 0.0115619783420493 | 78 | rna-XM_027982908.1 2279589 | 17 | 4355120 | 4355197 | Aphis gossypii 80765 | GCA|GTATGTGTTT...TATATTTTATAC/TATATATTTATA...TTTAG|ATG | 1 | 1 | 77.862 |
12239665 | GT-AG | 0 | 0.0224610890289061 | 58 | rna-XM_027982908.1 2279589 | 18 | 4355317 | 4355374 | Aphis gossypii 80765 | AAT|GTATGCATAA...TTATATTTATTT/ATTATATTTATT...ATTAG|GTT | 0 | 1 | 81.604 |
12239666 | GT-AG | 0 | 1.000000099473604e-05 | 420 | rna-XM_027982908.1 2279589 | 19 | 4355538 | 4355957 | Aphis gossypii 80765 | CTG|GTTAGATATC...TTTACTTTAATT/TTATTTTTTACT...TTTAG|TTA | 1 | 1 | 86.73 |
12239667 | GT-AG | 0 | 0.0008480561986456 | 180 | rna-XM_027982908.1 2279589 | 20 | 4356177 | 4356356 | Aphis gossypii 80765 | GCA|GTAAGTTTTA...ATGTTTGTAATT/ATGTTTGTAATT...TATAG|ATA | 1 | 1 | 93.616 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);