introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
16 rows where transcript_id = 2279588
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12239632 | GT-AG | 0 | 1.000000099473604e-05 | 42766 | rna-XM_027997521.1 2279588 | 1 | 1161781 | 1204546 | Aphis gossypii 80765 | CTG|GTAAGTACCT...ATAATTTTAATT/ATTTTTTTTACT...TTCAG|ATG | 1 | 1 | 6.803 |
12239633 | GT-AG | 0 | 0.003531595329919 | 108 | rna-XM_027997521.1 2279588 | 2 | 1161505 | 1161612 | Aphis gossypii 80765 | GGC|GTAAGTTTCT...ATATTTTTATCT/AATATTTTTATC...TAAAG|TCG | 1 | 1 | 11.998 |
12239634 | GT-AG | 0 | 7.10518317086525e-05 | 4796 | rna-XM_027997521.1 2279588 | 3 | 1156551 | 1161346 | Aphis gossypii 80765 | AAA|GTAAGCAATC...ATGATCTTGAAC/CATTTGTTAATA...CGTAG|ATT | 0 | 1 | 16.883 |
12239635 | GT-AG | 0 | 1.000000099473604e-05 | 41755 | rna-XM_027997521.1 2279588 | 4 | 1114667 | 1156421 | Aphis gossypii 80765 | ATT|GTGAGTACCA...TTTTTCTTCTAT/ATAATACTGACG...TGCAG|ACA | 0 | 1 | 20.872 |
12239636 | GT-AG | 0 | 0.0003286787280852 | 1441 | rna-XM_027997521.1 2279588 | 5 | 1113048 | 1114488 | Aphis gossypii 80765 | AAG|GTAACTGTAT...ATATTTTTACTA/TATATTTTCATT...TTCAG|ACA | 1 | 1 | 26.376 |
12239637 | GT-AG | 0 | 9.011993498397664e-05 | 88 | rna-XM_027997521.1 2279588 | 6 | 1112688 | 1112775 | Aphis gossypii 80765 | ATC|GTAAGTATTC...AACATTTTAAAC/AACATTTTAAAC...CGCAG|GTT | 0 | 1 | 34.787 |
12239638 | GT-AG | 0 | 0.0002001282828966 | 581 | rna-XM_027997521.1 2279588 | 7 | 1111886 | 1112466 | Aphis gossypii 80765 | CAG|GTATATCATT...TGTATATTAAAA/TGTATATTAAAA...TACAG|AGA | 2 | 1 | 41.62 |
12239639 | GT-AG | 0 | 0.0040123958339755 | 67 | rna-XM_027997521.1 2279588 | 8 | 1111666 | 1111732 | Aphis gossypii 80765 | CGT|GTACGTTTAT...ATGATTTTAGTC/CTATGATTGATA...TTTAG|GTT | 2 | 1 | 46.351 |
12239640 | GT-AG | 0 | 1.981470787052044e-05 | 66 | rna-XM_027997521.1 2279588 | 9 | 1111450 | 1111515 | Aphis gossypii 80765 | AGA|GTAAGTATTG...TATAATTTAATA/TATAATTTAATA...TAAAG|GGC | 2 | 1 | 50.989 |
12239641 | GT-AG | 0 | 1.000000099473604e-05 | 65 | rna-XM_027997521.1 2279588 | 10 | 1111228 | 1111292 | Aphis gossypii 80765 | ATG|GTGAATTATT...TTTATTTTACTT/CTTTTTCTAATC...TTTAG|CCG | 0 | 1 | 55.844 |
12239642 | GT-AG | 0 | 1.000000099473604e-05 | 477 | rna-XM_027997521.1 2279588 | 11 | 1110563 | 1111039 | Aphis gossypii 80765 | ACC|GTAAGTAAAT...CTACCTATAAAC/ATAATAATAATT...TATAG|TTA | 2 | 1 | 61.657 |
12239643 | GT-AG | 0 | 1.000000099473604e-05 | 91 | rna-XM_027997521.1 2279588 | 12 | 1110310 | 1110400 | Aphis gossypii 80765 | CCG|GTGAGTTTTT...CATTTCATACCA/ATACATTTCATA...TTTAG|CGG | 2 | 1 | 66.667 |
12239644 | GT-AG | 0 | 1.000000099473604e-05 | 1503 | rna-XM_027997521.1 2279588 | 13 | 1108718 | 1110220 | Aphis gossypii 80765 | GAT|GTGAGTATAT...TATGCTATAATG/CTTGTACTAATC...CGCAG|ACG | 1 | 1 | 69.419 |
12239645 | GT-AG | 0 | 0.0024771684186723 | 1331 | rna-XM_027997521.1 2279588 | 14 | 1106866 | 1108196 | Aphis gossypii 80765 | GAG|GTACGTTGTA...TTTGCTTTAACG/TTTGCTTTAACG...CTCAG|TTG | 0 | 1 | 85.529 |
12239646 | GT-AG | 0 | 1.000000099473604e-05 | 95 | rna-XM_027997521.1 2279588 | 15 | 1106644 | 1106738 | Aphis gossypii 80765 | CAG|GTATGGACGG...TTTGCTATAATC/TTTGCTATAATC...TTCAG|GTG | 1 | 1 | 89.456 |
12239647 | GT-AG | 0 | 1.000000099473604e-05 | 168 | rna-XM_027997521.1 2279588 | 16 | 1106352 | 1106519 | Aphis gossypii 80765 | CAA|GTAATTGACC...ATTATTTTAATA/ATTATTTTAATA...TGCAG|ATG | 2 | 1 | 93.29 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);