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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

16 rows where transcript_id = 2279588

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
12239632 GT-AG 0 1.000000099473604e-05 42766 rna-XM_027997521.1 2279588 1 1161781 1204546 Aphis gossypii 80765 CTG|GTAAGTACCT...ATAATTTTAATT/ATTTTTTTTACT...TTCAG|ATG 1 1 6.803
12239633 GT-AG 0 0.003531595329919 108 rna-XM_027997521.1 2279588 2 1161505 1161612 Aphis gossypii 80765 GGC|GTAAGTTTCT...ATATTTTTATCT/AATATTTTTATC...TAAAG|TCG 1 1 11.998
12239634 GT-AG 0 7.10518317086525e-05 4796 rna-XM_027997521.1 2279588 3 1156551 1161346 Aphis gossypii 80765 AAA|GTAAGCAATC...ATGATCTTGAAC/CATTTGTTAATA...CGTAG|ATT 0 1 16.883
12239635 GT-AG 0 1.000000099473604e-05 41755 rna-XM_027997521.1 2279588 4 1114667 1156421 Aphis gossypii 80765 ATT|GTGAGTACCA...TTTTTCTTCTAT/ATAATACTGACG...TGCAG|ACA 0 1 20.872
12239636 GT-AG 0 0.0003286787280852 1441 rna-XM_027997521.1 2279588 5 1113048 1114488 Aphis gossypii 80765 AAG|GTAACTGTAT...ATATTTTTACTA/TATATTTTCATT...TTCAG|ACA 1 1 26.376
12239637 GT-AG 0 9.011993498397664e-05 88 rna-XM_027997521.1 2279588 6 1112688 1112775 Aphis gossypii 80765 ATC|GTAAGTATTC...AACATTTTAAAC/AACATTTTAAAC...CGCAG|GTT 0 1 34.787
12239638 GT-AG 0 0.0002001282828966 581 rna-XM_027997521.1 2279588 7 1111886 1112466 Aphis gossypii 80765 CAG|GTATATCATT...TGTATATTAAAA/TGTATATTAAAA...TACAG|AGA 2 1 41.62
12239639 GT-AG 0 0.0040123958339755 67 rna-XM_027997521.1 2279588 8 1111666 1111732 Aphis gossypii 80765 CGT|GTACGTTTAT...ATGATTTTAGTC/CTATGATTGATA...TTTAG|GTT 2 1 46.351
12239640 GT-AG 0 1.981470787052044e-05 66 rna-XM_027997521.1 2279588 9 1111450 1111515 Aphis gossypii 80765 AGA|GTAAGTATTG...TATAATTTAATA/TATAATTTAATA...TAAAG|GGC 2 1 50.989
12239641 GT-AG 0 1.000000099473604e-05 65 rna-XM_027997521.1 2279588 10 1111228 1111292 Aphis gossypii 80765 ATG|GTGAATTATT...TTTATTTTACTT/CTTTTTCTAATC...TTTAG|CCG 0 1 55.844
12239642 GT-AG 0 1.000000099473604e-05 477 rna-XM_027997521.1 2279588 11 1110563 1111039 Aphis gossypii 80765 ACC|GTAAGTAAAT...CTACCTATAAAC/ATAATAATAATT...TATAG|TTA 2 1 61.657
12239643 GT-AG 0 1.000000099473604e-05 91 rna-XM_027997521.1 2279588 12 1110310 1110400 Aphis gossypii 80765 CCG|GTGAGTTTTT...CATTTCATACCA/ATACATTTCATA...TTTAG|CGG 2 1 66.667
12239644 GT-AG 0 1.000000099473604e-05 1503 rna-XM_027997521.1 2279588 13 1108718 1110220 Aphis gossypii 80765 GAT|GTGAGTATAT...TATGCTATAATG/CTTGTACTAATC...CGCAG|ACG 1 1 69.419
12239645 GT-AG 0 0.0024771684186723 1331 rna-XM_027997521.1 2279588 14 1106866 1108196 Aphis gossypii 80765 GAG|GTACGTTGTA...TTTGCTTTAACG/TTTGCTTTAACG...CTCAG|TTG 0 1 85.529
12239646 GT-AG 0 1.000000099473604e-05 95 rna-XM_027997521.1 2279588 15 1106644 1106738 Aphis gossypii 80765 CAG|GTATGGACGG...TTTGCTATAATC/TTTGCTATAATC...TTCAG|GTG 1 1 89.456
12239647 GT-AG 0 1.000000099473604e-05 168 rna-XM_027997521.1 2279588 16 1106352 1106519 Aphis gossypii 80765 CAA|GTAATTGACC...ATTATTTTAATA/ATTATTTTAATA...TGCAG|ATG 2 1 93.29

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 24.194ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)