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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

26 rows where transcript_id = 2279586

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Suggested facets: score, length, phase, in_cds

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
12239606 GT-AG 0 0.0002455268480271 9121 rna-XM_027998101.1 2279586 2 5196573 5205693 Aphis gossypii 80765 TAT|GTAAGTTTAT...CAAATTTTAATT/TTAATTTTTATT...AATAG|GTA 1 1 5.319
12239607 GT-AG 0 4.10322004871865e-05 10486 rna-XM_027998101.1 2279586 3 5205844 5216329 Aphis gossypii 80765 GTG|GTAATATTTT...TTTTTTTTAAAT/TTTTTTTTAAAT...TCCAG|GAT 1 1 9.608
12239608 GT-AG 0 0.0005650678425575 4107 rna-XM_027998101.1 2279586 4 5216435 5220541 Aphis gossypii 80765 GTA|GTAAGTTTAT...TTATTTTTATTT/TTTTTATTTATT...TATAG|AAA 1 1 12.611
12239609 GT-AG 0 0.0001352601545414 63 rna-XM_027998101.1 2279586 5 5220659 5220721 Aphis gossypii 80765 GCA|GTGGGTTTTA...AACTTTTTAATT/AACTTTTTAATT...TTTAG|AGC 1 1 15.957
12239610 GT-AG 0 6.428810086084297e-05 7489 rna-XM_027998101.1 2279586 6 5220845 5228333 Aphis gossypii 80765 TAA|GTAAGTTGAA...ATTTTCTTGAAT/TCGTTATTGATC...TTCAG|GCG 1 1 19.474
12239611 GT-AG 0 0.0003324105377028 67 rna-XM_027998101.1 2279586 7 5228433 5228499 Aphis gossypii 80765 TAT|GTAGTTATTA...TATACTTGGACT/CTTGGACTTATT...AATAG|GTA 1 1 22.305
12239612 GT-AG 0 0.1831868070829015 1307 rna-XM_027998101.1 2279586 8 5228656 5229962 Aphis gossypii 80765 ATG|GTATGCTTAT...TAATTTTTAAAA/TTGTATTTGATT...TTCAG|ATG 1 1 26.766
12239613 GT-AG 0 1.000000099473604e-05 5592 rna-XM_027998101.1 2279586 9 5230107 5235698 Aphis gossypii 80765 GCG|GTGAGTGATG...ATAAAATTGATA/ATAAAATTGATA...TACAG|ATA 1 1 30.884
12239614 GT-AG 0 0.000210779472561 885 rna-XM_027998101.1 2279586 10 5235942 5236826 Aphis gossypii 80765 GTA|GTAAGTATTG...GTTTCCATAATT/TAATTATTGATG...TTTAG|TGA 1 1 37.832
12239615 GT-AG 0 9.231329402739448e-05 550 rna-XM_027998101.1 2279586 11 5236950 5237499 Aphis gossypii 80765 GCC|GTAAGTATTG...GAATTTATGACC/ATAGAATTTATG...GACAG|AAT 1 1 41.35
12239616 GT-AG 0 0.0008602842004703 658 rna-XM_027998101.1 2279586 12 5237629 5238286 Aphis gossypii 80765 GCG|GTATGTTAAA...TTGATTTTGGTT/CAATGGTTGATT...CTTAG|ATG 1 1 45.039
12239617 GT-AG 0 0.0005298212057026 68 rna-XM_027998101.1 2279586 13 5238410 5238477 Aphis gossypii 80765 GTT|GTAAGATTTT...AATTCCTTATAA/AATATTTTGAAT...TTCAG|ATT 1 1 48.556
12239618 GT-AG 0 1.2734352484322572e-05 83 rna-XM_027998101.1 2279586 14 5238593 5238675 Aphis gossypii 80765 TTT|GTAAGTACAT...ATATTATTAAAT/ATATTATTAAAT...TATAG|CCA 2 1 51.844
12239619 GT-AG 0 1.2394023389385117e-05 69 rna-XM_027998101.1 2279586 15 5238751 5238819 Aphis gossypii 80765 TTT|GTAAGTGAAT...TATATTTTAATT/TATATTTTAATT...TACAG|AGA 2 1 53.989
12239620 GT-AG 0 1.000000099473604e-05 538 rna-XM_027998101.1 2279586 16 5238964 5239501 Aphis gossypii 80765 ATT|GTGAGATTAA...CTGGTTTTAATA/CTGGTTTTAATA...TTTAG|ACA 2 1 58.107
12239621 GT-AG 0 0.0001381033809519 63 rna-XM_027998101.1 2279586 17 5239574 5239636 Aphis gossypii 80765 ACT|GTAAGTACTT...CAGTTTTTGATT/CAGTTTTTGATT...TATAG|CGA 2 1 60.166
12239622 GT-AG 0 1.2230863208253632e-05 59 rna-XM_027998101.1 2279586 18 5239709 5239767 Aphis gossypii 80765 TTT|GTTAGTATCA...TTGTTTTTATTT/ATTGTTTTTATT...TTTAG|AGA 2 1 62.225
12239623 GT-AG 0 1.000000099473604e-05 87 rna-XM_027998101.1 2279586 19 5239840 5239926 Aphis gossypii 80765 TCT|GTGAGTATAA...TGAAACTTAATT/TTAATTTTCAAC...TACAG|AAA 2 1 64.284
12239624 GT-AG 0 1.000000099473604e-05 1197 rna-XM_027998101.1 2279586 20 5239999 5241195 Aphis gossypii 80765 ACT|GTGAGTCATT...TTAGCATTATCA/TATATATTTACA...TGTAG|GTT 2 1 66.343
12239625 GT-AG 0 1.000000099473604e-05 2513 rna-XM_027998101.1 2279586 21 5241594 5244106 Aphis gossypii 80765 CCG|GTAAGTGCAA...TTGTATTTATTT/ATTGTATTTATT...TTTAG|TGA 1 1 77.724
12239626 GT-AG 0 1.000000099473604e-05 127 rna-XM_027998101.1 2279586 22 5244255 5244381 Aphis gossypii 80765 CAG|GTAAATAAAA...TTATTTTTATTT/ATTATTTTTATT...TTCAG|AAA 2 1 81.956
12239627 GT-AG 0 4.578934455492424e-05 116 rna-XM_027998101.1 2279586 23 5244474 5244589 Aphis gossypii 80765 TAT|GTAAATGTTA...ATAATCATATTT/CATATTTTCATA...ATAAG|TTG 1 1 84.587
12239628 GT-AG 0 1.000000099473604e-05 1966 rna-XM_027998101.1 2279586 24 5244817 5246782 Aphis gossypii 80765 CAA|GTAAAAATAT...TATATTTTGAAT/TATATTTTGAAT...TTTAG|GTG 0 1 91.078
12239629 GT-AG 0 1.673946424130183e-05 3203 rna-XM_027998101.1 2279586 25 5246976 5250178 Aphis gossypii 80765 AAT|GTACGGTAAA...TATTTTTTGTCA/TTTTTTGTCATT...TGTAG|ATA 1 1 96.597
12239630 GT-AG 0 1.000000099473604e-05 63 rna-XM_027998101.1 2279586 26 5250228 5250290 Aphis gossypii 80765 TAG|GTAAAAAAAA...GTTTTATTAATA/TTAATATTTATT...TTCAG|AGG 2 1 97.998
12240576 GT-AG 0 1.000000099473604e-05 8551 rna-XM_027998101.1 2279586 1 5187859 5196409 Aphis gossypii 80765 GAG|GTAAGTCTAG...ATAATTTTGAAT/ATAATTTTGAAT...TCTAG|AAA   0 2.202

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 27.79ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)