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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

18 rows where transcript_id = 2279585

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Suggested facets: score, length, phase, in_cds

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
12239589 GT-AG 0 1.000000099473604e-05 449 rna-XM_027997946.1 2279585 2 1882864 1883312 Aphis gossypii 80765 CCG|GTGAGTTAAA...AAACTTTTAGTT/TTTTAGTTAAAA...TTTAG|TCG 2 1 13.26
12239590 GT-AG 0 0.0001249613090995 127 rna-XM_027997946.1 2279585 3 1883520 1883646 Aphis gossypii 80765 CAG|GTAAACATCC...GTTATTTTAATT/GTTATTTTAATT...TATAG|AAA 2 1 18.458
12239591 GT-AG 0 0.0052649536479394 541 rna-XM_027997946.1 2279585 4 1883858 1884398 Aphis gossypii 80765 CAT|GTAATTTTTT...TTTTTTTTAATT/TTTTTTTTAATT...TTCAG|GAG 0 1 23.757
12239592 GT-AG 0 0.0022269671248728 110 rna-XM_027997946.1 2279585 5 1884515 1884624 Aphis gossypii 80765 TAC|GTACGTACTA...ATGTCTTTATTT/AATGTCTTTATT...TATAG|CTG 2 1 26.67
12239593 GT-AG 0 0.0060793637721931 69 rna-XM_027997946.1 2279585 6 1884868 1884936 Aphis gossypii 80765 TAG|GTATGTTTTC...AATATATTATTT/ATTATTGTTATA...TTCAG|ACA 2 1 32.772
12239594 GT-AG 0 1.000000099473604e-05 70 rna-XM_027997946.1 2279585 7 1885116 1885185 Aphis gossypii 80765 TTG|GTTAGTTTTT...GAGATTTTAGTA/TGAGATTTTAGT...TACAG|CCC 1 1 37.268
12239595 GT-AG 0 2.426521299829372e-05 77 rna-XM_027997946.1 2279585 8 1885749 1885825 Aphis gossypii 80765 TTA|GTAAGTATGA...TATGACTTGATG/TTAATTTTTACT...TTCAG|GCA 0 1 51.406
12239596 GT-AG 0 1.000000099473604e-05 1484 rna-XM_027997946.1 2279585 9 1886002 1887485 Aphis gossypii 80765 AGA|GTGAGTATCA...TATTTTTTATTT/TTATTTTTTATT...TTTAG|TGA 2 1 55.826
12239597 GT-AG 0 0.000129141173195 70 rna-XM_027997946.1 2279585 10 1888151 1888220 Aphis gossypii 80765 ATG|GTAGGTTTAT...TTTTTCTTATAA/TTTTTTCTTATA...AACAG|GAA 1 1 72.526
12239598 GT-AG 0 1.000000099473604e-05 69 rna-XM_027997946.1 2279585 11 1888346 1888414 Aphis gossypii 80765 GTA|GTGAGTATAA...TTACTATTGATT/AATTAATTTACT...TATAG|AAT 0 1 75.665
12239599 GT-AG 0 1.000000099473604e-05 7060 rna-XM_027997946.1 2279585 12 1888591 1895650 Aphis gossypii 80765 GAG|GTAATAAAAA...ATATTTTTAATA/ATATTTTTAATA...TACAG|AAA 2 1 80.085
12239600 GT-AG 0 5.497023349532565e-05 6235 rna-XM_027997946.1 2279585 13 1895768 1902002 Aphis gossypii 80765 TCC|GTAAGTAATA...TAATTTTTACTA/GTAATTTTTACT...TTCAG|AAT 2 1 83.024
12239601 GT-AG 0 3.870733659713927e-05 3047 rna-XM_027997946.1 2279585 14 1902116 1905162 Aphis gossypii 80765 CAG|GTAATTTATT...ATAACCTTACTC/AATAACCTTACT...TATAG|AAA 1 1 85.861
12239602 GT-AG 0 1.000000099473604e-05 4441 rna-XM_027997946.1 2279585 15 1905300 1909740 Aphis gossypii 80765 AAG|GTAAAAATAA...TGATATTTAAAA/TTTTATGTCACT...TGCAG|GAT 0 1 89.302
12239603 GT-AG 0 4.0507298270484405e-05 4873 rna-XM_027997946.1 2279585 16 1909957 1914829 Aphis gossypii 80765 AAG|GTAAGCTGGT...TAAATTTTGATG/ATTTTATTTACG...CACAG|ATC 0 1 94.726
12239604 GT-AG 0 1.000000099473604e-05 5034 rna-XM_027997946.1 2279585 17 1914959 1919992 Aphis gossypii 80765 AAG|GTGAGCAGAA...TTGTATTTAACA/TTGTATTTAACA...TACAG|TTT 0 1 97.966
12239605 GT-AG 0 1.000000099473604e-05 3265 rna-XM_027997946.1 2279585 18 1920054 1923318 Aphis gossypii 80765 AAG|GTTAGTTGTT...CCTTCATTAGTT/ATATAGTTAATT...TTCAG|GTA 1 1 99.498
12240575 GT-AG 0 4.382552756240638e-05 84 rna-XM_027997946.1 2279585 1 1882595 1882678 Aphis gossypii 80765 TTG|GTACGGTTTG...TTATACTTACCG/ATTATACTTACC...TTTAG|GCC   0 9.819

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 27.105ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)