introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
12 rows where transcript_id = 2279582
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Suggested facets: score, phase, in_cds
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12239534 | GT-AG | 0 | 1.000000099473604e-05 | 735 | rna-XM_027998621.1 2279582 | 3 | 5265682 | 5266416 | Aphis gossypii 80765 | ACG|GTAAGTGTAG...CGTTACTTGATA/TAATGATTTATT...CATAG|GTT | 0 | 1 | 33.11 |
12239535 | GT-AG | 0 | 1.000000099473604e-05 | 1671 | rna-XM_027998621.1 2279582 | 4 | 5263440 | 5265110 | Aphis gossypii 80765 | GTG|GTGAGTTTTC...ATACTCATAAAA/TAAAAACTCATT...TTTAG|GTC | 1 | 1 | 45.053 |
12239536 | GT-AG | 0 | 1.000000099473604e-05 | 4380 | rna-XM_027998621.1 2279582 | 5 | 5257673 | 5262052 | Aphis gossypii 80765 | CGG|GTGAGTTTGA...TTATTTTTAACC/TTATTTTTAACC...TGCAG|TGG | 2 | 1 | 74.064 |
12239537 | GT-AG | 0 | 1.000000099473604e-05 | 741 | rna-XM_027998621.1 2279582 | 6 | 5256565 | 5257305 | Aphis gossypii 80765 | CAG|GTACGTCATC...ACGTTTTTGTTT/TTCATGTTCACG...CACAG|GGT | 0 | 1 | 81.74 |
12239538 | GT-AG | 0 | 1.000000099473604e-05 | 223 | rna-XM_027998621.1 2279582 | 7 | 5256219 | 5256441 | Aphis gossypii 80765 | ATG|GTGAGTTTGT...TCGTTTTTGATT/TCGTTTTTGATT...CACAG|GTG | 0 | 1 | 84.313 |
12239539 | GT-AG | 0 | 9.09953260525542e-05 | 91 | rna-XM_027998621.1 2279582 | 8 | 5255987 | 5256077 | Aphis gossypii 80765 | TCC|GTAAGTGTTT...TTTTTCTTTCCA/ATCCCGTTTATT...TACAG|TTG | 0 | 1 | 87.262 |
12239540 | GT-AG | 0 | 1.000000099473604e-05 | 1414 | rna-XM_027998621.1 2279582 | 9 | 5254471 | 5255884 | Aphis gossypii 80765 | AAG|GTAATATTCA...CAATATTTAATA/CAATATTTAATA...GTCAG|GTG | 0 | 1 | 89.396 |
12239541 | GT-AG | 0 | 1.000000099473604e-05 | 134 | rna-XM_027998621.1 2279582 | 10 | 5254175 | 5254308 | Aphis gossypii 80765 | AAG|GTGAGTCTGT...TAATGCGTGATT/TTACATTTCATT...TTCAG|CCT | 0 | 1 | 92.784 |
12239542 | GT-AG | 0 | 1.000000099473604e-05 | 373 | rna-XM_027998621.1 2279582 | 11 | 5253685 | 5254057 | Aphis gossypii 80765 | CGG|GTAAGTAGTA...TGTATTTTAATC/TGTATTTTAATC...TTCAG|GAA | 0 | 1 | 95.231 |
12239543 | GT-AG | 0 | 0.0001089415934787 | 456 | rna-XM_027998621.1 2279582 | 12 | 5253127 | 5253582 | Aphis gossypii 80765 | AAA|GTAAGTTTTT...CCAACCTGAACT/TCGTATGTAACC...TTTAG|GGC | 0 | 1 | 97.365 |
12240572 | GT-AG | 0 | 1.000000099473604e-05 | 32157 | rna-XM_027998621.1 2279582 | 1 | 5303134 | 5335290 | Aphis gossypii 80765 | AAG|GTAAGATATT...ATGTCTTTATTT/TATGTCTTTATT...TTCAG|GTG | 0 | 9.726 | |
12240573 | GT-AG | 0 | 1.000000099473604e-05 | 35546 | rna-XM_027998621.1 2279582 | 2 | 5267502 | 5303047 | Aphis gossypii 80765 | GAG|GTCAGTCTAT...TAATTCTTATCA/ATAATTCTTATC...TTTAG|GTC | 0 | 11.525 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);