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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

20 rows where transcript_id = 2279581

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Suggested facets: score, length, phase, in_cds

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
12239515 GT-AG 0 1.000000099473604e-05 631 rna-XM_027998560.1 2279581 2 1854990 1855620 Aphis gossypii 80765 GGG|GTAAGTTGTT...AATGCATTATAT/ATATAGTTAAAT...TTTAG|AAT 0 1 26.538
12239516 GT-AG 0 3.004913880282634e-05 54 rna-XM_027998560.1 2279581 3 1855859 1855912 Aphis gossypii 80765 CTG|GTATGAATAA...AAGGTTTTAAAA/CTAAAGTTTACA...TTCAG|GTG 1 1 30.82
12239517 GT-AG 0 0.0017953871793206 152 rna-XM_027998560.1 2279581 4 1856145 1856296 Aphis gossypii 80765 CAG|GTATATATTG...ACAGTATTAATT/ACAGTATTAATT...TTCAG|AAA 2 1 34.995
12239518 GT-AG 0 0.0003766284132933 65 rna-XM_027998560.1 2279581 5 1856477 1856541 Aphis gossypii 80765 TCG|GTATGTATAA...ACTATTTTCATT/ACTATTTTCATT...ATTAG|GGA 2 1 38.233
12239519 GT-AG 0 0.0001821205620717 77 rna-XM_027998560.1 2279581 6 1856704 1856780 Aphis gossypii 80765 CGA|GTAAGTATGC...TATATTTTAATC/TATATTTTAATC...ATAAG|CTT 2 1 41.148
12239520 GT-AG 0 0.0003221251992266 56 rna-XM_027998560.1 2279581 7 1856890 1856945 Aphis gossypii 80765 TCA|GTAAGTTAAA...TAATTTTTAATG/TTATGATTTATT...TTTAG|TTA 0 1 43.109
12239521 GT-AG 0 1.7036831439353825e-05 979 rna-XM_027998560.1 2279581 8 1857193 1858171 Aphis gossypii 80765 AAG|GTAAATTGTA...TGCATTTTATTT/ATGCATTTTATT...TTTAG|ACC 1 1 47.553
12239522 GT-AG 0 0.0248827925044186 64 rna-XM_027998560.1 2279581 9 1858299 1858362 Aphis gossypii 80765 TGG|GTATTTTTAT...TTTTTTTTACTC/TTTTTTTTTACT...TATAG|GAG 2 1 49.838
12239523 GT-AG 0 1.2244033170427058 61 rna-XM_027998560.1 2279581 10 1858548 1858608 Aphis gossypii 80765 AAG|GTATCTTATT...TATTATTTAATT/TATTATTTAATT...TTTAG|ATT 1 1 53.167
12239524 GT-AG 0 0.0732731282050584 752 rna-XM_027998560.1 2279581 11 1858728 1859479 Aphis gossypii 80765 AAA|GTATGTTTAT...TTATTTTTATTT/ATTATTTTTATT...TTCAG|GTA 0 1 55.308
12239525 GT-AG 0 1.000000099473604e-05 76 rna-XM_027998560.1 2279581 12 1859658 1859733 Aphis gossypii 80765 AAA|GTAAAACAAA...ATACTTTTAATG/TTATTGTTTATT...TTTAG|AAA 1 1 58.51
12239526 GT-AG 0 0.0055500908295997 677 rna-XM_027998560.1 2279581 13 1859803 1860479 Aphis gossypii 80765 CCG|GTATTTATTT...TATAACTTAATT/TTTATATTTATT...TATAG|GAA 1 1 59.752
12239527 GT-AG 0 3.17847659300185e-05 710 rna-XM_027998560.1 2279581 14 1860690 1861399 Aphis gossypii 80765 AAT|GTAAGTTAAG...TAATTATTAATT/ATTTTATTTATA...TGTAG|ACT 1 1 63.53
12239528 GT-AG 0 0.0004288510982117 64 rna-XM_027998560.1 2279581 15 1861557 1861620 Aphis gossypii 80765 TGA|GTATGTGCCT...AACACTTCAATA/TATATATTTATT...TTTAG|ATT 2 1 66.355
12239529 GT-AG 0 1.000000099473604e-05 71 rna-XM_027998560.1 2279581 16 1861879 1861949 Aphis gossypii 80765 CTG|GTTAGAATGT...CTAATATTAACT/CTAATATTAACT...TTTAG|TTA 2 1 70.997
12239530 GT-AG 0 0.0748483437284518 602 rna-XM_027998560.1 2279581 17 1862161 1862762 Aphis gossypii 80765 AAT|GTATGTTATT...TTGTTTTTAAAT/TTGTTTTTAAAT...TTTAG|TAT 0 1 74.793
12239531 GT-AG 0 1.000000099473604e-05 122 rna-XM_027998560.1 2279581 18 1862988 1863109 Aphis gossypii 80765 ATG|GTAAAGTAAA...GCAATTTTATTT/ATTATACTTATA...TATAG|ATC 0 1 78.841
12239532 GT-AG 0 1.000000099473604e-05 65 rna-XM_027998560.1 2279581 19 1863306 1863370 Aphis gossypii 80765 AAG|GTAATAAATA...TAATTTTTATTT/TTAATTTTTATT...TTTAG|GGC 1 1 82.368
12239533 GT-AG 0 2.86709764420237e-05 69 rna-XM_027998560.1 2279581 20 1863707 1863775 Aphis gossypii 80765 ATG|GTAAGTATTT...TTTTTTTTAGTA/TTTTAATTAATT...TATAG|TGG 1 1 88.413
12240571 GT-AG 0 1.000000099473604e-05 277 rna-XM_027998560.1 2279581 1 1854385 1854661 Aphis gossypii 80765 AAG|GTTTGTAAAT...ATATACTTAAAT/TATATACTTAAA...TTTAG|AAT   0 20.709

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 37.883ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)