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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

18 rows where transcript_id = 2279580

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Suggested facets: score, length, phase, in_cds

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
12239498 GT-AG 0 0.0005950777281194 83 rna-XM_027998416.1 2279580 2 5493263 5493345 Aphis gossypii 80765 CAA|GTAACAATTT...GTTTATTTATTT/TATTTATTTATT...AACAG|AGA 0 1 18.672
12239499 GT-AG 0 0.0012537390486851 83 rna-XM_027998416.1 2279580 3 5492992 5493074 Aphis gossypii 80765 TAA|GTAAGTTTTG...ATTTTTTTAAAT/TTATTATTAATT...GTTAG|CCC 2 1 22.302
12239500 GT-AG 0 2.509778081318101e-05 83 rna-XM_027998416.1 2279580 4 5492815 5492897 Aphis gossypii 80765 GAG|GTTTGTAATT...AATATCTTAAAA/ATTATACTAAAT...TTCAG|TTA 0 1 24.117
12239501 GT-AG 0 1.000000099473604e-05 84 rna-XM_027998416.1 2279580 5 5492538 5492621 Aphis gossypii 80765 AAG|GTAAATAAAA...ATATTTTTAATC/ATATTTTTAATC...TTTAG|TTA 1 1 27.843
12239502 GT-AG 0 0.0001228292112251 518 rna-XM_027998416.1 2279580 6 5491785 5492302 Aphis gossypii 80765 CTG|GTAAGTTTTT...ATCATCTTATTT/TTTATATTTATT...TTCAG|TGA 2 1 32.381
12239503 GT-AG 0 2.701823777496864e-05 71 rna-XM_027998416.1 2279580 7 5491666 5491736 Aphis gossypii 80765 CTT|GTAAGTACAT...GTCATTTTAATT/TTTTAATTAATT...TTTAG|AGT 2 1 33.308
12239504 GT-AG 0 1.7472415447542146e-05 1497 rna-XM_027998416.1 2279580 8 5489969 5491465 Aphis gossypii 80765 TAG|GTAAATTAGC...TTATACTTATTA/CTTATACTTATT...CCCAG|ATA 1 1 37.169
12239505 GT-AG 0 5.279826138393191e-05 69 rna-XM_027998416.1 2279580 9 5489595 5489663 Aphis gossypii 80765 AAG|GTAAATTATT...TAACTTTTAACA/AATTAGTTTATT...TATAG|ACA 0 1 43.059
12239506 GT-AG 0 0.0071296928248609 67 rna-XM_027998416.1 2279580 10 5489252 5489318 Aphis gossypii 80765 AAA|GTATGTATAT...TTTTTCCTAATA/TTTTTCCTAATA...AACAG|ATG 0 1 48.388
12239507 GT-AG 0 0.0008609744289672 67 rna-XM_027998416.1 2279580 11 5488948 5489014 Aphis gossypii 80765 GAG|GTAACATTTA...GTTTATTTATTT/TGTTTATTTATT...TTTAG|CTA 0 1 52.964
12239508 GT-AG 0 1.000000099473604e-05 61 rna-XM_027998416.1 2279580 12 5488347 5488407 Aphis gossypii 80765 ATG|GTAATAACTT...TATTTTTTAACC/TATTTTTTAACC...TATAG|TCA 0 1 63.391
12239509 GT-AG 0 1.000000099473604e-05 244 rna-XM_027998416.1 2279580 13 5487939 5488182 Aphis gossypii 80765 GAA|GTAAGTCGAT...ATGTTTTTATTT/TTTTTATTTATT...TATAG|AAG 2 1 66.557
12239510 GT-AG 0 2.153322864068238e-05 87 rna-XM_027998416.1 2279580 14 5487416 5487502 Aphis gossypii 80765 AAA|GTAATTTCAT...TTCTATTTAAAA/CAAATATTGATT...TTTAG|GAT 0 1 74.976
12239511 GT-AG 0 5.298860097398009e-05 102 rna-XM_027998416.1 2279580 15 5487193 5487294 Aphis gossypii 80765 AAG|GTATTAACCA...GAATCATTAATA/ATAATATTAATT...TTTAG|ATT 1 1 77.312
12239512 GT-AG 0 1.000000099473604e-05 68 rna-XM_027998416.1 2279580 16 5486916 5486983 Aphis gossypii 80765 GAG|GTAAATAAAA...ATTTACTTATTT/CATTTACTTATT...TTCAG|AAT 0 1 81.348
12239513 GT-AG 0 1.000000099473604e-05 69 rna-XM_027998416.1 2279580 17 5486442 5486510 Aphis gossypii 80765 AAG|GTAAGATTGT...AACATTTTAAAT/ATAACTTTTATA...TCCAG|CTT 0 1 89.168
12239514 GT-AG 0 1.000000099473604e-05 766 rna-XM_027998416.1 2279580 18 5485303 5486068 Aphis gossypii 80765 GAT|GTAAGAGTTT...TATTTATTAAAA/ATTATATTTATT...TTCAG|ATT 1 1 96.37
12240570 GT-AG 0 1.000000099473604e-05 4645 rna-XM_027998416.1 2279580 1 5493699 5498343 Aphis gossypii 80765 CAG|GTACATGTAC...TATTTTTTAAGA/TATTTTTTAAGA...TTTAG|GAT   0 12.3

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 26.0ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)