introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
18 rows where transcript_id = 2279580
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Suggested facets: score, length, phase, in_cds
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12239498 | GT-AG | 0 | 0.0005950777281194 | 83 | rna-XM_027998416.1 2279580 | 2 | 5493263 | 5493345 | Aphis gossypii 80765 | CAA|GTAACAATTT...GTTTATTTATTT/TATTTATTTATT...AACAG|AGA | 0 | 1 | 18.672 |
12239499 | GT-AG | 0 | 0.0012537390486851 | 83 | rna-XM_027998416.1 2279580 | 3 | 5492992 | 5493074 | Aphis gossypii 80765 | TAA|GTAAGTTTTG...ATTTTTTTAAAT/TTATTATTAATT...GTTAG|CCC | 2 | 1 | 22.302 |
12239500 | GT-AG | 0 | 2.509778081318101e-05 | 83 | rna-XM_027998416.1 2279580 | 4 | 5492815 | 5492897 | Aphis gossypii 80765 | GAG|GTTTGTAATT...AATATCTTAAAA/ATTATACTAAAT...TTCAG|TTA | 0 | 1 | 24.117 |
12239501 | GT-AG | 0 | 1.000000099473604e-05 | 84 | rna-XM_027998416.1 2279580 | 5 | 5492538 | 5492621 | Aphis gossypii 80765 | AAG|GTAAATAAAA...ATATTTTTAATC/ATATTTTTAATC...TTTAG|TTA | 1 | 1 | 27.843 |
12239502 | GT-AG | 0 | 0.0001228292112251 | 518 | rna-XM_027998416.1 2279580 | 6 | 5491785 | 5492302 | Aphis gossypii 80765 | CTG|GTAAGTTTTT...ATCATCTTATTT/TTTATATTTATT...TTCAG|TGA | 2 | 1 | 32.381 |
12239503 | GT-AG | 0 | 2.701823777496864e-05 | 71 | rna-XM_027998416.1 2279580 | 7 | 5491666 | 5491736 | Aphis gossypii 80765 | CTT|GTAAGTACAT...GTCATTTTAATT/TTTTAATTAATT...TTTAG|AGT | 2 | 1 | 33.308 |
12239504 | GT-AG | 0 | 1.7472415447542146e-05 | 1497 | rna-XM_027998416.1 2279580 | 8 | 5489969 | 5491465 | Aphis gossypii 80765 | TAG|GTAAATTAGC...TTATACTTATTA/CTTATACTTATT...CCCAG|ATA | 1 | 1 | 37.169 |
12239505 | GT-AG | 0 | 5.279826138393191e-05 | 69 | rna-XM_027998416.1 2279580 | 9 | 5489595 | 5489663 | Aphis gossypii 80765 | AAG|GTAAATTATT...TAACTTTTAACA/AATTAGTTTATT...TATAG|ACA | 0 | 1 | 43.059 |
12239506 | GT-AG | 0 | 0.0071296928248609 | 67 | rna-XM_027998416.1 2279580 | 10 | 5489252 | 5489318 | Aphis gossypii 80765 | AAA|GTATGTATAT...TTTTTCCTAATA/TTTTTCCTAATA...AACAG|ATG | 0 | 1 | 48.388 |
12239507 | GT-AG | 0 | 0.0008609744289672 | 67 | rna-XM_027998416.1 2279580 | 11 | 5488948 | 5489014 | Aphis gossypii 80765 | GAG|GTAACATTTA...GTTTATTTATTT/TGTTTATTTATT...TTTAG|CTA | 0 | 1 | 52.964 |
12239508 | GT-AG | 0 | 1.000000099473604e-05 | 61 | rna-XM_027998416.1 2279580 | 12 | 5488347 | 5488407 | Aphis gossypii 80765 | ATG|GTAATAACTT...TATTTTTTAACC/TATTTTTTAACC...TATAG|TCA | 0 | 1 | 63.391 |
12239509 | GT-AG | 0 | 1.000000099473604e-05 | 244 | rna-XM_027998416.1 2279580 | 13 | 5487939 | 5488182 | Aphis gossypii 80765 | GAA|GTAAGTCGAT...ATGTTTTTATTT/TTTTTATTTATT...TATAG|AAG | 2 | 1 | 66.557 |
12239510 | GT-AG | 0 | 2.153322864068238e-05 | 87 | rna-XM_027998416.1 2279580 | 14 | 5487416 | 5487502 | Aphis gossypii 80765 | AAA|GTAATTTCAT...TTCTATTTAAAA/CAAATATTGATT...TTTAG|GAT | 0 | 1 | 74.976 |
12239511 | GT-AG | 0 | 5.298860097398009e-05 | 102 | rna-XM_027998416.1 2279580 | 15 | 5487193 | 5487294 | Aphis gossypii 80765 | AAG|GTATTAACCA...GAATCATTAATA/ATAATATTAATT...TTTAG|ATT | 1 | 1 | 77.312 |
12239512 | GT-AG | 0 | 1.000000099473604e-05 | 68 | rna-XM_027998416.1 2279580 | 16 | 5486916 | 5486983 | Aphis gossypii 80765 | GAG|GTAAATAAAA...ATTTACTTATTT/CATTTACTTATT...TTCAG|AAT | 0 | 1 | 81.348 |
12239513 | GT-AG | 0 | 1.000000099473604e-05 | 69 | rna-XM_027998416.1 2279580 | 17 | 5486442 | 5486510 | Aphis gossypii 80765 | AAG|GTAAGATTGT...AACATTTTAAAT/ATAACTTTTATA...TCCAG|CTT | 0 | 1 | 89.168 |
12239514 | GT-AG | 0 | 1.000000099473604e-05 | 766 | rna-XM_027998416.1 2279580 | 18 | 5485303 | 5486068 | Aphis gossypii 80765 | GAT|GTAAGAGTTT...TATTTATTAAAA/ATTATATTTATT...TTCAG|ATT | 1 | 1 | 96.37 |
12240570 | GT-AG | 0 | 1.000000099473604e-05 | 4645 | rna-XM_027998416.1 2279580 | 1 | 5493699 | 5498343 | Aphis gossypii 80765 | CAG|GTACATGTAC...TATTTTTTAAGA/TATTTTTTAAGA...TTTAG|GAT | 0 | 12.3 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);