introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
27 rows where transcript_id = 2279579
This data as json, CSV (advanced)
Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12239471 | GT-AG | 0 | 0.0001114387787338 | 97 | rna-XM_027990682.1 2279579 | 1 | 5431484 | 5431580 | Aphis gossypii 80765 | CAG|GTAAACCTTT...AACCTTTTAGCA/ATGTGGCTCATT...TACAG|TAG | 2 | 1 | 2.375 |
12239472 | GT-AG | 0 | 1.000000099473604e-05 | 182 | rna-XM_027990682.1 2279579 | 2 | 5431171 | 5431352 | Aphis gossypii 80765 | GTG|GTAAGTACAT...ATATGTTTAATA/TATATATTAATA...TTTAG|GGT | 1 | 1 | 5.057 |
12239473 | GT-AG | 0 | 4.536238478678165e-05 | 87 | rna-XM_027990682.1 2279579 | 3 | 5430915 | 5431001 | Aphis gossypii 80765 | TAG|GTAAATTTAT...TATTGTTTAATT/TTGGTATTAATT...TCTAG|TGA | 2 | 1 | 8.518 |
12239474 | GT-AG | 0 | 3.293021224301804e-05 | 70 | rna-XM_027990682.1 2279579 | 4 | 5430697 | 5430766 | Aphis gossypii 80765 | ATT|GTAAGTGTAG...TATATTTTATTT/ATTTTATTTATA...CTTAG|ATA | 0 | 1 | 11.548 |
12239475 | GT-AG | 0 | 0.000429865862949 | 69 | rna-XM_027990682.1 2279579 | 5 | 5430521 | 5430589 | Aphis gossypii 80765 | CAA|GTATGACTTA...TATTGTTTGATT/TATTGTTTGATT...TTAAG|GCC | 2 | 1 | 13.739 |
12239476 | GT-AG | 0 | 0.0109195327179145 | 70 | rna-XM_027990682.1 2279579 | 6 | 5430299 | 5430368 | Aphis gossypii 80765 | ATG|GTATTTATTG...TTATTCTTGGTT/TTATATTTTATA...ATTAG|TGC | 1 | 1 | 16.851 |
12239477 | GT-AG | 0 | 1.1538335042034178e-05 | 137 | rna-XM_027990682.1 2279579 | 7 | 5429980 | 5430116 | Aphis gossypii 80765 | TTG|GTAAGCTAAA...TTTTTGTTATAC/TAAATTTTCATA...TATAG|GTA | 0 | 1 | 20.577 |
12239478 | GT-AG | 0 | 2.0501503468024564e-05 | 68 | rna-XM_027990682.1 2279579 | 8 | 5429744 | 5429811 | Aphis gossypii 80765 | ATG|GTAATTTATT...GTATTATTGACA/GTATTATTGACA...TGCAG|GAA | 0 | 1 | 24.017 |
12239479 | GT-AG | 0 | 1.000000099473604e-05 | 59 | rna-XM_027990682.1 2279579 | 9 | 5429595 | 5429653 | Aphis gossypii 80765 | AAA|GTAATAATTA...TTGATTTTATAA/ATTATGTTGATT...TTTAG|ACA | 0 | 1 | 25.86 |
12239480 | GT-AG | 0 | 1.000000099473604e-05 | 78 | rna-XM_027990682.1 2279579 | 10 | 5429350 | 5429427 | Aphis gossypii 80765 | AAG|GTGAAAATGA...TAATTTTTAATA/TAATTTTTAATA...TTTAG|TAT | 2 | 1 | 29.279 |
12239481 | GT-AG | 0 | 1.000000099473604e-05 | 459 | rna-XM_027990682.1 2279579 | 11 | 5428716 | 5429174 | Aphis gossypii 80765 | AAG|GTAAATAAAT...CAATTCTTACTG/AATCTATTCATT...TACAG|ACA | 0 | 1 | 32.862 |
12239482 | GT-AG | 0 | 0.0001544053411336 | 76 | rna-XM_027990682.1 2279579 | 12 | 5428428 | 5428503 | Aphis gossypii 80765 | TTT|GTAAATAGAC...TTATTTTTAATT/TTATTTTTAATT...TTTAG|GCG | 2 | 1 | 37.203 |
12239483 | GT-AG | 0 | 2.9967191016159703e-05 | 470 | rna-XM_027990682.1 2279579 | 13 | 5427779 | 5428248 | Aphis gossypii 80765 | ATT|GTAAGTAATT...ATATTTTTAAAA/TATTTTTTTATA...TTTAG|TAA | 1 | 1 | 40.868 |
12239484 | GT-AG | 0 | 0.000159324309877 | 71 | rna-XM_027990682.1 2279579 | 14 | 5427574 | 5427644 | Aphis gossypii 80765 | TTG|GTAAGTTTTG...TTTTATTTAACA/TTTTATTTAACA...TTTAG|AAA | 0 | 1 | 43.612 |
12239485 | GT-AG | 0 | 1.5401109605909503e-05 | 222 | rna-XM_027990682.1 2279579 | 15 | 5427244 | 5427465 | Aphis gossypii 80765 | AAT|GTAAGTCAAT...TTATTTTTAATT/TTATTTTTAATT...TTCAG|CTG | 0 | 1 | 45.823 |
12239486 | GT-AG | 0 | 3.1666307156449375e-05 | 55 | rna-XM_027990682.1 2279579 | 16 | 5426820 | 5426874 | Aphis gossypii 80765 | GGA|GTAAGTGTTA...TATTTTATAACT/TATTTTATAACT...CATAG|GTT | 0 | 1 | 53.378 |
12239487 | GT-AG | 0 | 0.0001358337985633 | 59 | rna-XM_027990682.1 2279579 | 17 | 5426509 | 5426567 | Aphis gossypii 80765 | GAA|GTAATTTTAT...ATTAATTTAATT/ATTAATTTAATT...TTTAG|AAT | 0 | 1 | 58.538 |
12239488 | GT-AG | 0 | 9.568538203627214e-05 | 275 | rna-XM_027990682.1 2279579 | 18 | 5426045 | 5426319 | Aphis gossypii 80765 | AAT|GTAAGTATAA...ATATTTTTAATT/ATATTTTTAATT...TTTAG|TTA | 0 | 1 | 62.408 |
12239489 | GT-AG | 0 | 0.0001957929602845 | 63 | rna-XM_027990682.1 2279579 | 19 | 5425862 | 5425924 | Aphis gossypii 80765 | CAA|GTAAGCTCAT...TAATTTTTATTA/TTATTATTAATT...TTAAG|GGG | 0 | 1 | 64.865 |
12239490 | GT-AG | 0 | 0.0059294425862711 | 61 | rna-XM_027990682.1 2279579 | 20 | 5425699 | 5425759 | Aphis gossypii 80765 | CAA|GTATAATTAA...ACAGTTTTGAAA/TAATGATTCAAT...TTTAG|ATG | 0 | 1 | 66.953 |
12239491 | GT-AG | 0 | 1.000000099473604e-05 | 72 | rna-XM_027990682.1 2279579 | 21 | 5425357 | 5425428 | Aphis gossypii 80765 | CAA|GTTAGTATTT...TAAGTATTGATT/TAAGTATTGATT...TTTAG|TTA | 0 | 1 | 72.482 |
12239492 | GT-AG | 0 | 1.000000099473604e-05 | 80 | rna-XM_027990682.1 2279579 | 22 | 5425088 | 5425167 | Aphis gossypii 80765 | CAG|GTAAGTTATA...CATTCATTAATT/CATTCATTAATT...TCTAG|GTT | 0 | 1 | 76.351 |
12239493 | GT-AG | 0 | 4.981637480621099e-05 | 57 | rna-XM_027990682.1 2279579 | 23 | 5424875 | 5424931 | Aphis gossypii 80765 | ATG|GTAAATTTGT...GAATCTTTTATT/ATTAAATTTATC...TTTAG|TGT | 0 | 1 | 79.545 |
12239494 | GT-AG | 0 | 0.0034782350761509 | 55 | rna-XM_027990682.1 2279579 | 24 | 5424454 | 5424508 | Aphis gossypii 80765 | GAA|GTATGTATTA...TTTATTATAATT/CTAATATTTATT...TTTAG|TAT | 0 | 1 | 87.039 |
12239495 | GT-AG | 0 | 0.028224649855258 | 850 | rna-XM_027990682.1 2279579 | 25 | 5423497 | 5424346 | Aphis gossypii 80765 | ATG|GTATGTTATG...TTTTTTTTAATT/TTTTTTTTAATT...TTCAG|TAA | 2 | 1 | 89.23 |
12239496 | GT-AG | 0 | 0.0007518660970525 | 78 | rna-XM_027990682.1 2279579 | 26 | 5423279 | 5423356 | Aphis gossypii 80765 | AAT|GTTTGTTTAT...TATATCATAACA/CATTTATTTATT...TATAG|CTG | 1 | 1 | 92.097 |
12239497 | GT-AG | 0 | 0.0012267931236537 | 61 | rna-XM_027990682.1 2279579 | 27 | 5423051 | 5423111 | Aphis gossypii 80765 | CAA|GTATAAATGA...GTGTCTTTGATA/ATTTATTTCATA...TGTAG|GAT | 0 | 1 | 95.516 |
Advanced export
JSON shape: default, array, newline-delimited, object
CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);