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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

27 rows where transcript_id = 2279579

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
12239471 GT-AG 0 0.0001114387787338 97 rna-XM_027990682.1 2279579 1 5431484 5431580 Aphis gossypii 80765 CAG|GTAAACCTTT...AACCTTTTAGCA/ATGTGGCTCATT...TACAG|TAG 2 1 2.375
12239472 GT-AG 0 1.000000099473604e-05 182 rna-XM_027990682.1 2279579 2 5431171 5431352 Aphis gossypii 80765 GTG|GTAAGTACAT...ATATGTTTAATA/TATATATTAATA...TTTAG|GGT 1 1 5.057
12239473 GT-AG 0 4.536238478678165e-05 87 rna-XM_027990682.1 2279579 3 5430915 5431001 Aphis gossypii 80765 TAG|GTAAATTTAT...TATTGTTTAATT/TTGGTATTAATT...TCTAG|TGA 2 1 8.518
12239474 GT-AG 0 3.293021224301804e-05 70 rna-XM_027990682.1 2279579 4 5430697 5430766 Aphis gossypii 80765 ATT|GTAAGTGTAG...TATATTTTATTT/ATTTTATTTATA...CTTAG|ATA 0 1 11.548
12239475 GT-AG 0 0.000429865862949 69 rna-XM_027990682.1 2279579 5 5430521 5430589 Aphis gossypii 80765 CAA|GTATGACTTA...TATTGTTTGATT/TATTGTTTGATT...TTAAG|GCC 2 1 13.739
12239476 GT-AG 0 0.0109195327179145 70 rna-XM_027990682.1 2279579 6 5430299 5430368 Aphis gossypii 80765 ATG|GTATTTATTG...TTATTCTTGGTT/TTATATTTTATA...ATTAG|TGC 1 1 16.851
12239477 GT-AG 0 1.1538335042034178e-05 137 rna-XM_027990682.1 2279579 7 5429980 5430116 Aphis gossypii 80765 TTG|GTAAGCTAAA...TTTTTGTTATAC/TAAATTTTCATA...TATAG|GTA 0 1 20.577
12239478 GT-AG 0 2.0501503468024564e-05 68 rna-XM_027990682.1 2279579 8 5429744 5429811 Aphis gossypii 80765 ATG|GTAATTTATT...GTATTATTGACA/GTATTATTGACA...TGCAG|GAA 0 1 24.017
12239479 GT-AG 0 1.000000099473604e-05 59 rna-XM_027990682.1 2279579 9 5429595 5429653 Aphis gossypii 80765 AAA|GTAATAATTA...TTGATTTTATAA/ATTATGTTGATT...TTTAG|ACA 0 1 25.86
12239480 GT-AG 0 1.000000099473604e-05 78 rna-XM_027990682.1 2279579 10 5429350 5429427 Aphis gossypii 80765 AAG|GTGAAAATGA...TAATTTTTAATA/TAATTTTTAATA...TTTAG|TAT 2 1 29.279
12239481 GT-AG 0 1.000000099473604e-05 459 rna-XM_027990682.1 2279579 11 5428716 5429174 Aphis gossypii 80765 AAG|GTAAATAAAT...CAATTCTTACTG/AATCTATTCATT...TACAG|ACA 0 1 32.862
12239482 GT-AG 0 0.0001544053411336 76 rna-XM_027990682.1 2279579 12 5428428 5428503 Aphis gossypii 80765 TTT|GTAAATAGAC...TTATTTTTAATT/TTATTTTTAATT...TTTAG|GCG 2 1 37.203
12239483 GT-AG 0 2.9967191016159703e-05 470 rna-XM_027990682.1 2279579 13 5427779 5428248 Aphis gossypii 80765 ATT|GTAAGTAATT...ATATTTTTAAAA/TATTTTTTTATA...TTTAG|TAA 1 1 40.868
12239484 GT-AG 0 0.000159324309877 71 rna-XM_027990682.1 2279579 14 5427574 5427644 Aphis gossypii 80765 TTG|GTAAGTTTTG...TTTTATTTAACA/TTTTATTTAACA...TTTAG|AAA 0 1 43.612
12239485 GT-AG 0 1.5401109605909503e-05 222 rna-XM_027990682.1 2279579 15 5427244 5427465 Aphis gossypii 80765 AAT|GTAAGTCAAT...TTATTTTTAATT/TTATTTTTAATT...TTCAG|CTG 0 1 45.823
12239486 GT-AG 0 3.1666307156449375e-05 55 rna-XM_027990682.1 2279579 16 5426820 5426874 Aphis gossypii 80765 GGA|GTAAGTGTTA...TATTTTATAACT/TATTTTATAACT...CATAG|GTT 0 1 53.378
12239487 GT-AG 0 0.0001358337985633 59 rna-XM_027990682.1 2279579 17 5426509 5426567 Aphis gossypii 80765 GAA|GTAATTTTAT...ATTAATTTAATT/ATTAATTTAATT...TTTAG|AAT 0 1 58.538
12239488 GT-AG 0 9.568538203627214e-05 275 rna-XM_027990682.1 2279579 18 5426045 5426319 Aphis gossypii 80765 AAT|GTAAGTATAA...ATATTTTTAATT/ATATTTTTAATT...TTTAG|TTA 0 1 62.408
12239489 GT-AG 0 0.0001957929602845 63 rna-XM_027990682.1 2279579 19 5425862 5425924 Aphis gossypii 80765 CAA|GTAAGCTCAT...TAATTTTTATTA/TTATTATTAATT...TTAAG|GGG 0 1 64.865
12239490 GT-AG 0 0.0059294425862711 61 rna-XM_027990682.1 2279579 20 5425699 5425759 Aphis gossypii 80765 CAA|GTATAATTAA...ACAGTTTTGAAA/TAATGATTCAAT...TTTAG|ATG 0 1 66.953
12239491 GT-AG 0 1.000000099473604e-05 72 rna-XM_027990682.1 2279579 21 5425357 5425428 Aphis gossypii 80765 CAA|GTTAGTATTT...TAAGTATTGATT/TAAGTATTGATT...TTTAG|TTA 0 1 72.482
12239492 GT-AG 0 1.000000099473604e-05 80 rna-XM_027990682.1 2279579 22 5425088 5425167 Aphis gossypii 80765 CAG|GTAAGTTATA...CATTCATTAATT/CATTCATTAATT...TCTAG|GTT 0 1 76.351
12239493 GT-AG 0 4.981637480621099e-05 57 rna-XM_027990682.1 2279579 23 5424875 5424931 Aphis gossypii 80765 ATG|GTAAATTTGT...GAATCTTTTATT/ATTAAATTTATC...TTTAG|TGT 0 1 79.545
12239494 GT-AG 0 0.0034782350761509 55 rna-XM_027990682.1 2279579 24 5424454 5424508 Aphis gossypii 80765 GAA|GTATGTATTA...TTTATTATAATT/CTAATATTTATT...TTTAG|TAT 0 1 87.039
12239495 GT-AG 0 0.028224649855258 850 rna-XM_027990682.1 2279579 25 5423497 5424346 Aphis gossypii 80765 ATG|GTATGTTATG...TTTTTTTTAATT/TTTTTTTTAATT...TTCAG|TAA 2 1 89.23
12239496 GT-AG 0 0.0007518660970525 78 rna-XM_027990682.1 2279579 26 5423279 5423356 Aphis gossypii 80765 AAT|GTTTGTTTAT...TATATCATAACA/CATTTATTTATT...TATAG|CTG 1 1 92.097
12239497 GT-AG 0 0.0012267931236537 61 rna-XM_027990682.1 2279579 27 5423051 5423111 Aphis gossypii 80765 CAA|GTATAAATGA...GTGTCTTTGATA/ATTTATTTCATA...TGTAG|GAT 0 1 95.516

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 27.484ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)