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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

11 rows where transcript_id = 2279578

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
12239460 GT-AG 0 1.000000099473604e-05 698 rna-XM_027998337.1 2279578 1 2639690 2640387 Aphis gossypii 80765 CAG|GTAAGATGTC...TTATTCTTAATA/TATATATTTATT...TACAG|AAA 2 1 3.036
12239461 GT-AG 0 1.35090616512792e-05 331 rna-XM_027998337.1 2279578 2 2640498 2640828 Aphis gossypii 80765 AAG|GTTTGTAAAT...TGTTTTTTAATA/TGTTTTTTAATA...ATTAG|ATT 1 1 5.277
12239462 GT-AG 0 0.0005279079196871 203 rna-XM_027998337.1 2279578 3 2641029 2641231 Aphis gossypii 80765 AAG|GTATATATCA...CTAATATTGATA/CTAATATTGATA...GTCAG|GAT 0 1 9.352
12239463 GT-AG 0 1.4446383467018097e-05 60 rna-XM_027998337.1 2279578 4 2641421 2641480 Aphis gossypii 80765 TAT|GTAAGTTAAA...TTGTTTATATTT/AATTTGTTTATA...TTCAG|AAT 0 1 13.203
12239464 GT-AG 0 0.0110568174584101 1008 rna-XM_027998337.1 2279578 5 2641631 2642638 Aphis gossypii 80765 TAT|GTATGTTATT...TATCCCTTGTAT/ATGTATTTTATG...TTTAG|GAT 0 1 16.259
12239465 GT-AG 0 1.000000099473604e-05 2057 rna-XM_027998337.1 2279578 6 2642736 2644792 Aphis gossypii 80765 TAG|GTGAATCACA...TATTGTTTAATA/TATTGTTTAATA...TTTAG|GTG 1 1 18.236
12239466 GT-AG 0 1.000000099473604e-05 26803 rna-XM_027998337.1 2279578 7 2644958 2671760 Aphis gossypii 80765 ATG|GTGAGTGAAA...AATTTCATAAAT/TAATAATTAATT...TACAG|GTA 1 1 21.597
12239467 GT-AG 0 0.0004150887375483 7780 rna-XM_027998337.1 2279578 8 2672022 2679801 Aphis gossypii 80765 AAG|GTATGTTGAT...TTCTATTTAATG/TTTCTATTTAAT...TACAG|TTG 1 1 26.915
12239468 GT-AG 0 2.897524764801749e-05 209 rna-XM_027998337.1 2279578 9 2679948 2680156 Aphis gossypii 80765 GAC|GTAAATACAT...CGTCTTTTGACA/CGTCTTTTGACA...TTCAG|GCC 0 1 29.89
12239469 GT-AG 0 1.000000099473604e-05 1267 rna-XM_027998337.1 2279578 10 2680398 2681664 Aphis gossypii 80765 ATG|GTAATAGTTA...GATTTTTTAATT/GATTTTTTAATT...TTCAG|AGC 1 1 34.8
12239470 GT-AG 0 1.000000099473604e-05 66 rna-XM_027998337.1 2279578 11 2684022 2684087 Aphis gossypii 80765 AAG|GTGAGCTTAA...TTTATTTTATCA/ATTTATTTTATT...TTTAG|GTT 0 1 82.824

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 46.553ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)