introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
10 rows where transcript_id = 2279576
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12239449 | GT-AG | 0 | 1.000000099473604e-05 | 601 | rna-XM_027992090.1 2279576 | 1 | 2427756 | 2428356 | Aphis gossypii 80765 | GAT|GTGAGTACCA...TGTACTTTATCA/TTATCATTGACT...ATTAG|TAT | 0 | 1 | 1.643 |
12239450 | GT-AG | 0 | 1.000000099473604e-05 | 584 | rna-XM_027992090.1 2279576 | 2 | 2427061 | 2427644 | Aphis gossypii 80765 | CCG|GTAAATATAA...ATGTTTTTCACA/ATGTTTTTCACA...ATTAG|TCG | 0 | 1 | 3.604 |
12239451 | GT-AG | 0 | 0.00069621095145 | 90 | rna-XM_027992090.1 2279576 | 3 | 2426878 | 2426967 | Aphis gossypii 80765 | AAG|GTATATCTAA...TTAGTATTAATA/TTAGTATTAATA...TTTAG|AAA | 0 | 1 | 5.246 |
12239452 | GT-AG | 0 | 0.0003223060471407 | 89 | rna-XM_027992090.1 2279576 | 4 | 2426662 | 2426750 | Aphis gossypii 80765 | TTG|GTAATTTTTA...ATTTCCATAATA/TATTTATTCATT...TTTAG|CAT | 1 | 1 | 7.49 |
12239453 | GT-AG | 0 | 1.4915636485796945e-05 | 62 | rna-XM_027992090.1 2279576 | 5 | 2426529 | 2426590 | Aphis gossypii 80765 | ACA|GTAAGATCGT...TTTTTTTTATTT/ATTTTTTTTATT...TTCAG|GTC | 0 | 1 | 8.744 |
12239454 | GT-AG | 0 | 3.368621295351788e-05 | 83 | rna-XM_027992090.1 2279576 | 6 | 2422686 | 2422768 | Aphis gossypii 80765 | TTG|GTAAGTATCA...TATTTCTTATTG/GTATTTCTTATT...TTCAG|ATG | 1 | 1 | 75.163 |
12239455 | GT-AG | 0 | 1.000000099473604e-05 | 598 | rna-XM_027992090.1 2279576 | 7 | 2421267 | 2421864 | Aphis gossypii 80765 | TTA|GTAAGTAACA...ATAACTGTAACT/ATAAATTTGATA...TTTAG|GTT | 0 | 1 | 89.666 |
12239456 | GT-AG | 0 | 0.0002093427284188 | 84 | rna-XM_027992090.1 2279576 | 8 | 2421095 | 2421178 | Aphis gossypii 80765 | CAG|GTATTATAAT...TATTTTTTAAAC/TATTTTTTAAAC...ATTAG|GTG | 1 | 1 | 91.221 |
12239457 | GT-AG | 0 | 1.851956894420374e-05 | 71 | rna-XM_027992090.1 2279576 | 9 | 2420871 | 2420941 | Aphis gossypii 80765 | AAG|GTTTTTGTCT...TAATATTTAATG/ATAATATTTAAT...TTTAG|ATG | 1 | 1 | 93.923 |
12239458 | GT-AG | 0 | 3.81276761983884e-05 | 434 | rna-XM_027992090.1 2279576 | 10 | 2420281 | 2420714 | Aphis gossypii 80765 | AAG|GTAGTATTTT...AATATTTTAATT/ATTGTATTGATT...TTTAG|TGA | 1 | 1 | 96.679 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);