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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

34 rows where transcript_id = 2279575

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Suggested facets: dinucleotide_pair, is_minor, score, phase, in_cds

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
12239416 AT-AC 1 99.99999999965829 45293 rna-XM_027997514.1 2279575 2 1058909 1104201 Aphis gossypii 80765 CCC|ATATCCTTTT...ATTTCCTTAACC/AATTTTTTGATA...TACAC|GTG 2 1 11.252
12239417 GT-AG 0 1.849281523504559e-05 67 rna-XM_027997514.1 2279575 3 1058730 1058796 Aphis gossypii 80765 CAA|GTAATATATT...TCTTTTTTAAAT/TCTTTTTTAAAT...TACAG|GTG 0 1 12.889
12239418 GT-AG 0 1.369703070944429e-05 137 rna-XM_027997514.1 2279575 4 1058459 1058595 Aphis gossypii 80765 AGG|GTATGAAACT...ATTATATTAATA/ATTATATTAATA...TTTAG|TGC 2 1 14.847
12239419 GT-AG 0 1.000000099473604e-05 8873 rna-XM_027997514.1 2279575 5 1049488 1058360 Aphis gossypii 80765 CAA|GTGAGTAAAA...GATTTCTAAATT/CGATTTCTAAAT...TACAG|GTA 1 1 16.279
12239420 GT-AG 0 1.000000099473604e-05 35906 rna-XM_027997514.1 2279575 6 1013410 1049315 Aphis gossypii 80765 CAA|GTAAGAAAAA...AGTCTTTTGATG/AGTCTTTTGATG...TGCAG|GAT 2 1 18.793
12239421 GT-AG 0 1.419363416197646e-05 16803 rna-XM_027997514.1 2279575 7 996333 1013135 Aphis gossypii 80765 GTT|GTAAGTATAA...ATTTATTTATTT/TATTTATTTATT...TCCAG|GTC 0 1 22.797
12239422 GT-AG 0 2.951273234160668e-05 21659 rna-XM_027997514.1 2279575 8 974581 996239 Aphis gossypii 80765 GTG|GTAAGTTTCG...TTATTTATAATA/GATTTATTTATA...TTTAG|ATC 0 1 24.156
12239423 GT-AG 0 1.000000099473604e-05 28989 rna-XM_027997514.1 2279575 9 945413 974401 Aphis gossypii 80765 GAA|GTAAGTATTT...CGAATATTAATG/ATATTAATGATC...GACAG|GTA 2 1 26.772
12239424 GT-AG 0 1.000000099473604e-05 1631 rna-XM_027997514.1 2279575 10 943621 945251 Aphis gossypii 80765 ACG|GTAAGGGAAA...AGTTTTTTATTA/TTTTTATTAATC...AACAG|TTA 1 1 29.125
12239425 GT-AG 0 1.3504423116024823e-05 2003 rna-XM_027997514.1 2279575 11 941508 943510 Aphis gossypii 80765 TCG|GTAAGTAATG...TTCTTTTTAATT/TTCTTTTTAATT...TCTAG|AGC 0 1 30.732
12239426 GT-AG 0 1.000000099473604e-05 3143 rna-XM_027997514.1 2279575 12 938014 941156 Aphis gossypii 80765 CTG|GTAAATCACA...ACGTTTATAACA/ATTATGATAATT...TATAG|AAT 0 1 35.861
12239427 GT-AG 0 3.263898135694558e-05 175 rna-XM_027997514.1 2279575 13 937584 937758 Aphis gossypii 80765 CTC|GTAAGTTAAT...ATTTTCTTCCCC/CTTATTATAATT...TACAG|ATG 0 1 39.588
12239428 GT-AG 0 1.5154423203612e-05 970 rna-XM_027997514.1 2279575 14 936383 937352 Aphis gossypii 80765 CAG|GTAACGCAGA...TATGTTTTATTT/TTATGTTTTATT...TTTAG|CCT 0 1 42.964
12239429 GT-AG 0 0.0015573143713934 792 rna-XM_027997514.1 2279575 15 935439 936230 Aphis gossypii 80765 AAG|GTATATTCAC...AAACACTTAATA/ATAAGTTTGAAC...TTTAG|TAT 2 1 45.185
12239430 GT-AG 0 1.000000099473604e-05 4804 rna-XM_027997514.1 2279575 16 930422 935225 Aphis gossypii 80765 CAG|GTAAAACAAT...ATTTAATTAACC/ATTTAATTAACC...TGTAG|TAT 2 1 48.298
12239431 GT-AG 0 0.0057196443189662 4605 rna-XM_027997514.1 2279575 17 925690 930294 Aphis gossypii 80765 CAG|GTACCTGGAA...GCGTTTTTAACG/TTATTATTTATT...AACAG|ATT 0 1 50.153
12239432 GT-AG 0 1.000000099473604e-05 1088 rna-XM_027997514.1 2279575 18 924446 925533 Aphis gossypii 80765 GAG|GTAATAGCTA...ATTATTTTAATG/ATTATTTTAATG...TTCAG|CGC 0 1 52.433
12239433 GT-AG 0 2.234620881421276e-05 2352 rna-XM_027997514.1 2279575 19 921883 924234 Aphis gossypii 80765 AGG|GTAAGTTATA...ATTATTTTATTT/AATTATTTTATT...GATAG|ACA 1 1 55.517
12239434 GT-AG 0 1.000000099473604e-05 875 rna-XM_027997514.1 2279575 20 920820 921694 Aphis gossypii 80765 GTG|GTTTGTAAAA...TTATGTTTAAAT/TTATGTTTAAAT...AATAG|CGT 0 1 58.264
12239435 GT-AG 0 1.000000099473604e-05 3515 rna-XM_027997514.1 2279575 21 917171 920685 Aphis gossypii 80765 TAG|GTAAATATAA...ATATTTTTATAT/TATATTTTTATA...TACAG|TGG 2 1 60.222
12239436 GT-AG 0 1.000000099473604e-05 131 rna-XM_027997514.1 2279575 22 916890 917020 Aphis gossypii 80765 AGG|GTAAATAATT...GTATTTGTAAAT/TGTAAATTAATA...TTTAG|TGG 2 1 62.414
12239437 GT-AG 0 1.6919757060487296e-05 2756 rna-XM_027997514.1 2279575 23 914007 916762 Aphis gossypii 80765 CAG|GTAATCAATT...TTTATTTTACCA/TATTTATTTATT...TACAG|AGC 0 1 64.27
12239438 GT-AG 0 2.065822788824725e-05 3686 rna-XM_027997514.1 2279575 24 910088 913773 Aphis gossypii 80765 CGG|GTAAGCCGGA...TAGATCTTACTT/ATCTTACTTATA...TCAAG|TTT 2 1 67.675
12239439 GT-AG 0 5.4247321497110087e-05 130 rna-XM_027997514.1 2279575 25 909765 909894 Aphis gossypii 80765 AAA|GTAAAATTGG...TTGCTTTTGATT/TTGCTTTTGATT...CATAG|GTT 0 1 70.495
12239440 GT-AG 0 1.2913480798039384e-05 311 rna-XM_027997514.1 2279575 26 909304 909614 Aphis gossypii 80765 AGT|GTAAGTACGC...ATTGTGTTAACT/ATTGTGTTAACT...CGCAG|GTG 0 1 72.687
12239441 GT-AG 0 1.000000099473604e-05 3598 rna-XM_027997514.1 2279575 27 905544 909141 Aphis gossypii 80765 CAA|GTGAGTATAT...AATTTCGTAAAA/AAATTTGTCAAT...AACAG|CTT 0 1 75.055
12239442 GT-AG 0 5.387756083045921e-05 145 rna-XM_027997514.1 2279575 28 905180 905324 Aphis gossypii 80765 CAA|GTACGTGAAA...CCCTTTTTAATT/TTAATTTTAATT...CTCAG|CCG 0 1 78.255
12239443 GT-AG 0 1.000000099473604e-05 91 rna-XM_027997514.1 2279575 29 904896 904986 Aphis gossypii 80765 GAA|GTGAGTTTCC...ACAATCAAAATA/AATAAATTGAAA...TATAG|AAA 1 1 81.076
12239444 GT-AG 0 7.632917491061658e-05 245 rna-XM_027997514.1 2279575 30 904499 904743 Aphis gossypii 80765 AAA|GTAAGTTTTT...ATATACTTGAAA/CGAGTATTCACC...TACAG|GCG 0 1 83.297
12239445 GT-AG 0 0.0001005165284166 146 rna-XM_027997514.1 2279575 31 904243 904388 Aphis gossypii 80765 CAA|GTACGTATAC...TTTGTATTGATA/TTTGTATTGATA...TTTAG|ATG 2 1 84.904
12239446 GC-AG 0 1.000000099473604e-05 8924 rna-XM_027997514.1 2279575 32 895195 904118 Aphis gossypii 80765 ATC|GCTAGGGGTG...TTCTTTTTCATT/TTCTTTTTCATT...CATAG|ATG 0 1 86.716
12239447 GT-AG 0 1.000000099473604e-05 184 rna-XM_027997514.1 2279575 33 894830 895013 Aphis gossypii 80765 AAA|GTAAATCAAC...ACTTTTTTATTG/CACTTTTTTATT...AACAG|GTC 1 1 89.361
12239448 GT-AG 0 9.584407738621096e-05 63 rna-XM_027997514.1 2279575 34 894570 894632 Aphis gossypii 80765 GAT|GTAACGCGAT...GAAACTATAACT/CTATAACTAATT...CGCAG|GTC 0 1 92.24
12240568 GT-AG 0 1.000000099473604e-05 27778 rna-XM_027997514.1 2279575 1 1104565 1132342 Aphis gossypii 80765 TGA|GTGAGTAAAT...GTTCTCATATTG/AAAGTTCTCATA...TTTAG|GTA   0 6.313

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 26.631ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)