introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
19 rows where transcript_id = 2279574
This data as json, CSV (advanced)
Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
12239397 | GT-AG | 0 | 1.000000099473604e-05 | 72 | rna-XM_027989115.1 2279574 | 2 | 2754278 | 2754349 | Aphis gossypii 80765 | ATG|GTAATATTAT...GATTTTTTAAAA/TATTGCTTTATT...TTTAG|TGG | 0 | 1 | 2.97 |
12239398 | GT-AG | 0 | 5.900013065228525e-05 | 1477 | rna-XM_027989115.1 2279574 | 3 | 2758817 | 2760293 | Aphis gossypii 80765 | ATG|GTAAATATAT...TTTTTCTTATTA/ATTTTTCTTATT...TTTAG|CTT | 0 | 1 | 60.9 |
12239399 | GT-AG | 0 | 1.000000099473604e-05 | 78 | rna-XM_027989115.1 2279574 | 4 | 2760414 | 2760491 | Aphis gossypii 80765 | AAG|GTAAATTATT...TATTTGTTAAAA/ATTATATTTAAA...TATAG|AAC | 0 | 1 | 62.456 |
12239400 | GT-AG | 0 | 0.0001140679870297 | 13661 | rna-XM_027989115.1 2279574 | 5 | 2760997 | 2774657 | Aphis gossypii 80765 | AAG|GTAAATTTAT...ATTATTTTAACT/ATTATTTTAACT...AGCAG|TAA | 1 | 1 | 69.005 |
12239401 | GT-AG | 0 | 1.000000099473604e-05 | 116 | rna-XM_027989115.1 2279574 | 6 | 2774823 | 2774938 | Aphis gossypii 80765 | GCG|GTGAGTACAG...CTTGTCTTTTCT/GTTGTTGTTATT...TCCAG|AGA | 1 | 1 | 71.145 |
12239402 | GT-AG | 0 | 0.0004131693363118 | 921 | rna-XM_027989115.1 2279574 | 7 | 2775275 | 2776195 | Aphis gossypii 80765 | CTA|GTAAGTTTAT...TATTTTTTATTT/TTATTTTTTATT...TTCAG|AAG | 1 | 1 | 75.503 |
12239403 | GT-AG | 0 | 0.0178296791300135 | 67 | rna-XM_027989115.1 2279574 | 8 | 2776382 | 2776448 | Aphis gossypii 80765 | ATG|GTATTTTAAG...TGGTTTTTAATT/TGGTTTTTAATT...TTTAG|AAA | 1 | 1 | 77.915 |
12239404 | GT-AG | 0 | 1.000000099473604e-05 | 637 | rna-XM_027989115.1 2279574 | 9 | 2776554 | 2777190 | Aphis gossypii 80765 | AAG|GTTAGTACCT...TAATATTTGACT/TAATATTTGACT...TATAG|GTG | 1 | 1 | 79.276 |
12239405 | GT-AG | 0 | 3.0467556878650304e-05 | 655 | rna-XM_027989115.1 2279574 | 10 | 2777611 | 2778265 | Aphis gossypii 80765 | CTG|GTAATTTATT...TAATATTTAATT/TAATATTTAATT...TTCAG|TTT | 1 | 1 | 84.723 |
12239406 | GT-AG | 0 | 1.000000099473604e-05 | 118 | rna-XM_027989115.1 2279574 | 11 | 2778461 | 2778578 | Aphis gossypii 80765 | TAG|GTAAATAATG...TAATTTGTAATT/TTTATGCTAATT...TATAG|TTG | 1 | 1 | 87.252 |
12239407 | GT-AG | 0 | 1.000000099473604e-05 | 4129 | rna-XM_027989115.1 2279574 | 12 | 2778752 | 2782880 | Aphis gossypii 80765 | CAG|GTACAACAAT...TACTATTTACCA/ATACTATTTACC...TTCAG|AAA | 0 | 1 | 89.496 |
12239408 | GT-AG | 0 | 1.000000099473604e-05 | 79 | rna-XM_027989115.1 2279574 | 13 | 2782959 | 2783037 | Aphis gossypii 80765 | TTG|GTTAGTATCA...GTTTATTTAACA/AAATGTTTAATT...TTTAG|TTG | 0 | 1 | 90.507 |
12239409 | GT-AG | 0 | 0.0018082705289978 | 1050 | rna-XM_027989115.1 2279574 | 14 | 2783114 | 2784163 | Aphis gossypii 80765 | AAG|GTAACTTAAC...GTTTTCATAACT/GTTGTTTTCATA...TTCAG|CGT | 1 | 1 | 91.493 |
12239410 | GT-AG | 0 | 1.000000099473604e-05 | 3428 | rna-XM_027989115.1 2279574 | 15 | 2784227 | 2787654 | Aphis gossypii 80765 | ACG|GTGAGTTATT...TTTTACTTAATT/TTTTTGTTTACT...TTTAG|AAG | 1 | 1 | 92.31 |
12239411 | GT-AG | 0 | 2.53532390855897e-05 | 68 | rna-XM_027989115.1 2279574 | 16 | 2787724 | 2787791 | Aphis gossypii 80765 | AAG|GTATGATAAC...ATTATTTTATTG/AATTATTTTATT...TTTAG|TGC | 1 | 1 | 93.205 |
12239412 | GT-AG | 0 | 1.000000099473604e-05 | 82 | rna-XM_027989115.1 2279574 | 17 | 2787834 | 2787915 | Aphis gossypii 80765 | AAG|GTAAATTGTT...TAAATTTTGTCA/TTTAAAATTATT...TACAG|CAA | 1 | 1 | 93.749 |
12239413 | GT-AG | 0 | 1.000000099473604e-05 | 768 | rna-XM_027989115.1 2279574 | 18 | 2787983 | 2788750 | Aphis gossypii 80765 | AAA|GTAAGTAATT...TCTACAGTAACA/ATAATGGTAACA...TATAG|CTC | 2 | 1 | 94.618 |
12239414 | GT-AG | 0 | 0.0251154647562814 | 677 | rna-XM_027989115.1 2279574 | 19 | 2788863 | 2789539 | Aphis gossypii 80765 | AAG|GTATACATTT...CATACATTAATA/TATATTATTATT...TTTAG|AAC | 0 | 1 | 96.071 |
12239415 | GT-AG | 0 | 6.372879413222475e-05 | 437 | rna-XM_027989115.1 2279574 | 20 | 2789692 | 2790128 | Aphis gossypii 80765 | TGA|GTAAGTCGTA...TTTTTTTTAAAA/TTTTTTTTTAAA...CTCAG|GGA | 2 | 1 | 98.042 |
Advanced export
JSON shape: default, array, newline-delimited, object
CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);