WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 22631663

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
122792803	GT-AG	1.000000099473604e-05	3609	rna-XM_009422797.2 22631663	2	27501446	27505054	Musa acuminata 4641	GAG\|GTGAGAGGAG...TGATTATTAAAC/CTATATATGATT...TTCAG\|CTA	0	1	41.597
122792804	GT-AG	1.000000099473604e-05	699	rna-XM_009422797.2 22631663	3	27500589	27501287	Musa acuminata 4641	AAG\|GTGAGGCCAG...GCGGCTTTACCT/TCTATACTTATC...TTCAG\|GGA	2	1	45.275
122792805	GT-AG	0.0001967911249238	4714	rna-XM_009422797.2 22631663	4	27495037	27499750	Musa acuminata 4641	CAG\|GTCTGTTTCC...GTTTTCTTCAAA/TGTGATTTGATT...TGCAG\|TTG	0	1	64.781
122792806	GT-AG	0.0056223251104668	173	rna-XM_009422797.2 22631663	5	27494717	27494889	Musa acuminata 4641	GAA\|GTAAGCTTTC...TTTGTTTTACTC/GTTTGTTTTACT...GGCAG\|AAA	0	1	68.203
122792807	GT-AG	0.0256423401479222	96	rna-XM_009422797.2 22631663	6	27494306	27494401	Musa acuminata 4641	AAG\|GTATGCTTCA...TGATATTTATCA/TTGATATTTATC...TGCAG\|AAC	0	1	75.535
122792808	GT-AG	6.027118117876298e-05	1338	rna-XM_009422797.2 22631663	7	27492908	27494245	Musa acuminata 4641	GAA\|GTAAGTTGCA...TTTTCTGTAATT/ACTCTACTAATT...TCCAG\|GTT	0	1	76.932
122802456	GT-AG	9.816128028149548e-05	370	rna-XM_009422797.2 22631663	1	27506695	27507064	Musa acuminata 4641	TTG\|GTTTGTTTGT...GCACCGTTAGAC/GTTAGACTTACG...TGCAG\|GGA		0	6.192
122802457	GT-AG	0.0010215132534965	125	rna-XM_009422797.2 22631663	8	27492285	27492409	Musa acuminata 4641	TCG\|GTAATTTTTC...ATACTTTTGATT/ATACTTTTGATT...GACAG\|GCA		0	88.524

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);