introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 22631632

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
122792368 GT-AG 0 1.000000099473604e-05 123 rna-XM_009419368.2 22631632 1 20287267 20287389 Musa acuminata 4641 CCG|GTAGTTGCCC...GTTGCTGTGATA/ATCGATTTGATA...TGCAG|GGG 1 1 1.863
122792369 GT-AG 0 1.000000099473604e-05 2196 rna-XM_009419368.2 22631632 2 20284696 20286891 Musa acuminata 4641 CAG|GTCGGTTTTC...TTTTTTTTACTT/GTTTTTTTTACT...TCAAG|GAT 1 1 12.288
122792370 GT-AG 0 0.0168193014608537 109 rna-XM_009419368.2 22631632 3 20282062 20282170 Musa acuminata 4641 AAG|GTATCTGCAT...GCTCTTTTGGTT/TACAAGCTAACA...GTTAG|ATT 0 1 82.485
122792371 GT-AG 0 1.6216049679199894e-05 124 rna-XM_009419368.2 22631632 4 20281668 20281791 Musa acuminata 4641 CAG|GTTTAATTTT...GTTTTCTCATCC/AGTTTTCTCATC...TGCAG|GGT 0 1 89.992
122792372 GT-AG 0 1.000000099473604e-05 2348 rna-XM_009419368.2 22631632 5 20279239 20281586 Musa acuminata 4641 CAG|GTAATTCATG...TGTATCATATTT/TTCACACTCACC...CTTAG|GCA 0 1 92.244
122792373 GT-AG 0 7.368524868546793e-05 84 rna-XM_009419368.2 22631632 6 20279043 20279126 Musa acuminata 4641 AAG|GTATTGTTTC...TCATGGTTGAAT/TTGAATTTTATA...TGTAG|GAA 1 1 95.357
122792374 GT-AG 0 1.000000099473604e-05 90 rna-XM_009419368.2 22631632 7 20278886 20278975 Musa acuminata 4641 GAG|GTTAGTTTTG...AATTTCTCAGCT/AAATTTCTCAGC...TTCAG|GCA 2 1 97.22

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);