introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 22607856

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
122606463 GT-AG 0 0.0001469727244381 1220 rna-XM_021211322.1 22607856 1 2562299 2563518 Mus pahari 10093 CAG|GTAACCAGCC...CTGACATCAATC/ATGAGGCTCACA...CCCAG|GTT 0 1 0.291
122606464 GT-AG 0 1.000000099473604e-05 1114 rna-XM_021211322.1 22607856 2 2563642 2564755 Mus pahari 10093 GAG|GTGATTTGTG...CTTTTCTTACCT/ACTTTTCTTACC...TTCAG|GTT 0 1 1.994
122606465 GT-AG 0 1.000000099473604e-05 545 rna-XM_021211322.1 22607856 3 2564924 2565468 Mus pahari 10093 CAC|GTAAAGCTAC...AGATGCTTAGCT/TTGTTTTCCACC...TCTAG|GCA 0 1 4.321
122606466 GT-AG 0 0.0003743573711595 9227 rna-XM_021211322.1 22607856 4 2568339 2577565 Mus pahari 10093 GCA|GTAAGTTGGG...GTTGTCTTATCC/CCTTTCTTCATT...TATAG|TGA 2 1 44.066
122606467 GT-AG 0 1.000000099473604e-05 2895 rna-XM_021211322.1 22607856 5 2579594 2582488 Mus pahari 10093 GAA|GTTAATCCCA...AGGACCCTGGTT/CGTGGGGTAATT...TTTAG|AGC 2 1 72.151
122606468 GT-AG 0 1.000000099473604e-05 78 rna-XM_021211322.1 22607856 6 2582889 2582966 Mus pahari 10093 GGG|GTGAGTAAGG...AGAGCCTGGAGG/ACTGTGCCCACA...AAAAG|GGG 0 1 77.69
122606469 GT-AG 0 1.000000099473604e-05 1164 rna-XM_021211322.1 22607856 7 2583436 2584599 Mus pahari 10093 TGA|GTGAGAAGGA...TGTCCCTGAACT/GATAATTTCATC...CCAAG|CTC 1 1 84.185
122606470 GT-AG 0 1.7778142665607164e-05 21250 rna-XM_021211322.1 22607856 8 2585406 2606655 Mus pahari 10093 CTG|GTTTGTGGTG...GAACCTTTAACC/AAGCGCCTTATC...TTCAG|GAG 0 1 95.347

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);