WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 22411766

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
121675066	GT-AG	0.0001741028681463	74	rna-gnl\|WGS:JAEPRB\|INT45_00000048-RA 22411766	1	164021	164094	Mucor circinatus 2054153	CTT\|GTATGAAGGT...AATTTCTTTTTT/AATGATTTAATA...TGTAG\|ATT	0	1	32.051
121675067	GT-AG	3.143201974125394e-05	87	rna-gnl\|WGS:JAEPRB\|INT45_00000048-RA 22411766	2	164167	164253	Mucor circinatus 2054153	TCT\|GTAAGTATGA...AATCTGTTAAAG/TTTAATCTGATA...GATAG\|ATT	0	1	39.744
121675068	GT-AG	2.9051036023160952e-05	87	rna-gnl\|WGS:JAEPRB\|INT45_00000048-RA 22411766	3	164320	164406	Mucor circinatus 2054153	GTG\|GTATGTGAAA...ATGCGCTTATTA/TATGCGCTTATT...TATAG\|CTG	0	1	46.795
121675069	GT-AG	0.0026918865197281	123	rna-gnl\|WGS:JAEPRB\|INT45_00000048-RA 22411766	4	164488	164610	Mucor circinatus 2054153	CGT\|GTAAGTTTAT...TTTTTTTTAATA/TTTTTTTTAATA...TTCAG\|ATT	0	1	55.449
121675070	GT-AG	1.1085784864457046e-05	85	rna-gnl\|WGS:JAEPRB\|INT45_00000048-RA 22411766	5	164724	164808	Mucor circinatus 2054153	CCG\|GTAAGCACAA...TAATTATTAATT/TAATTATTAATT...TTTAG\|ATT	2	1	67.521
121675071	GT-AG	1.000000099473604e-05	90	rna-gnl\|WGS:JAEPRB\|INT45_00000048-RA 22411766	6	164897	164986	Mucor circinatus 2054153	AAG\|GTAAATAAAG...TTATCTTTATGT/GTTATCTTTATG...AATAG\|TTG	0	1	76.923
121675072	GT-AG	2.856896206441658e-05	89	rna-gnl\|WGS:JAEPRB\|INT45_00000048-RA 22411766	7	165058	165146	Mucor circinatus 2054153	GAT\|GTAAGTTGAT...TTTTTTTTCGCT/TAACTACTAATA...CTCAG\|GCG	2	1	84.509

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);