WtMTA: introns: 5 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

5 rows where transcript_id = 22411737

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
121674942	GT-AG	0.0007939902210066	87	rna-gnl\|WGS:JAEPRB\|INT45_00000012-RA 22411737	1	44455	44541	Mucor circinatus 2054153	AAG\|GTTTTTTTTT...ATAACTTAAACT/ATATTATTCAAT...ATCAG\|GTT	0	1	13.52
121674943	GT-AG	1.000000099473604e-05	88	rna-gnl\|WGS:JAEPRB\|INT45_00000012-RA 22411737	2	44334	44421	Mucor circinatus 2054153	AAG\|GTAAGCGGAG...ACTTGTTTCACT/ACTTGTTTCACT...AACAG\|GAT	0	1	16.084
121674944	GT-AG	0.0015167451601897	145	rna-gnl\|WGS:JAEPRB\|INT45_00000012-RA 22411737	3	43797	43941	Mucor circinatus 2054153	CAA\|GTAAGTTTTG...TTTTTTTTAAAA/TGGATACTTATT...AAAAG\|ATG	2	1	46.542
121674945	GT-AG	1.000000099473604e-05	85	rna-gnl\|WGS:JAEPRB\|INT45_00000012-RA 22411737	4	43418	43502	Mucor circinatus 2054153	AGC\|GTAAGTGTAA...GACAACTTATAA/AGACAACTTATA...ATTAG\|TTT	2	1	69.386
121674946	GT-AG	1.000000099473604e-05	102	rna-gnl\|WGS:JAEPRB\|INT45_00000012-RA 22411737	5	43241	43342	Mucor circinatus 2054153	TAG\|GTAAAATTAA...CCATTATTAACC/CCATTATTAACC...AATAG\|TTT	2	1	75.214

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);