introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 22370896

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
121406227 GT-AG 0 1.000000099473604e-05 190 rna-XM_010088368.2 22370896 1 41328 41517 Morus notabilis 981085 ATG|GTGAGAAATC...CATTGCTTACTC/TTTATTGTCATT...TTTAG|GCA 1 1 11.331
121406228 GT-AG 0 0.0018043547836629 205 rna-XM_010088368.2 22370896 2 41046 41250 Morus notabilis 981085 CAA|GTAGTTTTTC...TACTTGTTAAAT/CGATTACTAATA...AAAAG|GCA 0 1 19.802
121406229 GT-AG 0 1.572394798472568e-05 927 rna-XM_010088368.2 22370896 3 39981 40907 Morus notabilis 981085 CAG|GTAAATATTT...CTCCTTTTATTA/TTTATTATTATT...GCTAG|ATC 0 1 34.983
121406230 GT-AG 0 1.000000099473604e-05 108 rna-XM_010088368.2 22370896 4 39723 39830 Morus notabilis 981085 AAG|GTAAAAAATG...ATCTTTTTATTT/GATCTTTTTATT...TGCAG|GCA 0 1 51.485
121406231 GT-AG 0 1.000000099473604e-05 357 rna-XM_010088368.2 22370896 5 39336 39692 Morus notabilis 981085 ACG|GTAAGTAGTG...TCGACCTTATAC/TTGATATTAACG...GGCAG|GGT 0 1 54.785
121406232 GT-AG 0 0.3481166627748606 112 rna-XM_010088368.2 22370896 6 39016 39127 Morus notabilis 981085 CTG|GTATTCTTTT...TCATTGTTAACA/GTTATATTAATT...TACAG|GTG 1 1 77.668
121406233 GT-AG 0 1.2846885085259382e-05 461 rna-XM_010088368.2 22370896 7 38473 38933 Morus notabilis 981085 TAG|GTATAACATT...ATGGCTTCGAAT/TATTATCTAATG...TATAG|CAT 2 1 86.689
121406234 GT-AG 0 1.000000099473604e-05 4272 rna-XM_010088368.2 22370896 8 34092 38363 Morus notabilis 981085 AAG|GTAATAAGAA...TTTTTCTTCACT/TTTTTCTTCACT...TGCAG|GAT 0 1 98.68

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);