WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 22246086

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
120576805	GT-AG	0.0001162715981697	8064	rna-XM_029225122.1 22246086	1	626	8689	Monodon monoceros 40151	GGT\|GTAAGTTTAG...GTCTTCTTTTCA/CTTCTTTTCATT...TCTAG\|GAA	0	1	6.736
120576806	GT-AG	0.0002444451511797	1118	rna-XM_029225122.1 22246086	2	8794	9911	Monodon monoceros 40151	TGG\|GTACAGTTGT...ATGATTTTACCT/CATGATTTTACC...TCTAG\|ACG	2	1	24.698
120576807	GT-AG	2.411988027095449e-05	120	rna-XM_029225122.1 22246086	3	9978	10097	Monodon monoceros 40151	AAA\|GTAAGTCCCT...GTCCTCTTATTT/TGTCCTCTTATT...CCCAG\|GTG	2	1	36.097
120576808	GT-AG	1.000000099473604e-05	3480	rna-XM_029225122.1 22246086	4	10150	13629	Monodon monoceros 40151	GTG\|GTAAGTATGT...CAGTTCATAAAA/TAGCAGTTCATA...TTAAG\|GTT	0	1	45.078
120576809	GT-AG	1.000000099473604e-05	3017	rna-XM_029225122.1 22246086	5	13678	16694	Monodon monoceros 40151	AAG\|GTAATGTGTC...TTTCCCTTAAGC/TCTCAGCTGACT...TCTAG\|ATG	0	1	53.368
120576810	GT-AG	1.000000099473604e-05	85	rna-XM_029225122.1 22246086	6	16731	16815	Monodon monoceros 40151	CAG\|GTAAGGAGTT...GCCTTCTTATTT/TGCCTTCTTATT...CCTAG\|CCC	0	1	59.585
120576811	GT-AG	1.000000099473604e-05	2257	rna-XM_029225122.1 22246086	7	16868	19124	Monodon monoceros 40151	ACA\|GTGAGTAGTA...GTCCTCTTGGTT/CTGAGTTTAACC...TACAG\|TCC	1	1	68.566

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);