WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 22245996

descending

id ▼	dinucleotide_pair	is_minor	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
120576422	GT-AG	0	5.541774568369093e-05	6580	rna-XM_029224582.1 22245996	1	25771	32350	Monodon monoceros 40151	CCT\|GTAAGTGTTT...TTGCTTTTATTT/CTTGCTTTTATT...TTTAG\|GGG	0	1	16.23
120576423	GT-AG	0	0.0042934712624106	13178	rna-XM_029224582.1 22245996	2	12500	25677	Monodon monoceros 40151	TTT\|GTAAGTTTAA...GTGTCCTTAATT/TTTATTTTCAGT...TTCAG\|GGC	0	1	25.605
120576424	GT-AG	1	99.67752807080286	1474	rna-XM_029224582.1 22245996	3	10962	12435	Monodon monoceros 40151	CAT\|GTATCCTTTT...TCACCCTTAACC/TTCAGTGTCACC...CTCAG\|ACC	1	1	32.056
120576425	GT-AG	0	2.5865983262206692e-05	1790	rna-XM_029224582.1 22245996	4	9073	10862	Monodon monoceros 40151	AGT\|GTAAGTTACA...GACTATTTATTA/CTGTTGCTGACT...TTCAG\|CTG	1	1	42.036
120576426	GT-AG	0	0.0914783692253488	253	rna-XM_029224582.1 22245996	5	8676	8928	Monodon monoceros 40151	TGT\|GTATGTGTGA...AGTATCTTAATT/TTTCTTTTTATA...TAAAG\|CAA	1	1	56.552
120576427	GT-AG	0	1.000000099473604e-05	4171	rna-XM_029224582.1 22245996	6	4409	8579	Monodon monoceros 40151	CAG\|GTAAATTGAT...GACCTTTTACCC/AGACCTTTTACC...TCTAG\|TTG	1	1	66.23
120576428	GT-AG	0	1.000000099473604e-05	633	rna-XM_029224582.1 22245996	7	3657	4289	Monodon monoceros 40151	CAA\|GTAAGTTGAA...ATTTCCGGAATA/GTTTTGTTGAGA...TACAG\|GCA	0	1	78.226

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);