introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 22245987

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, phase, in_cds

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
120576385 GT-AG 0 1.000000099473604e-05 2497 rna-XM_029227097.1 22245987 2 5046 7542 Monodon monoceros 40151 TCT|GTAAGGGCTC...GGACCCTCACCC/CGGACCCTCACC...CTCAG|TGG 1 1 26.804
120576386 GT-AG 0 1.000000099473604e-05 528 rna-XM_029227097.1 22245987 3 4436 4963 Monodon monoceros 40151 AAA|GTAAGGAGAG...GGATCCAGGACA/TGGGAGCTGAGC...TCCAG|GCT 2 1 32.44
120576387 GT-AG 0 1.7817042662688248e-05 238 rna-XM_029227097.1 22245987 4 4067 4304 Monodon monoceros 40151 CCA|GTAAGTCAGG...CATGCCCTGACC/CATGCCCTGACC...CCCAG|TCT 1 1 41.443
120576388 GT-AG 0 1.000000099473604e-05 1051 rna-XM_029227097.1 22245987 5 2683 3733 Monodon monoceros 40151 CTG|GTGGGTCTGG...AGCACCTGCGCC/GCTGGAGTCAGT...TGCAG|TGT 1 1 64.33
120576389 GT-AG 0 1.000000099473604e-05 1858 rna-XM_029227097.1 22245987 6 584 2441 Monodon monoceros 40151 CAG|GTCAGCATGT...CTGCCCTCATCC/CTCATCCTCACC...CCCAG|GGC 2 1 80.893
120576390 GT-AG 0 1.000000099473604e-05 110 rna-XM_029227097.1 22245987 7 386 495 Monodon monoceros 40151 CAC|GTGAGTCCCC...CCTGCCTGATCC/CCCTGCCTGATC...CCCAG|AAC 0 1 86.942
120576391 GT-AG 0 1.000000099473604e-05 129 rna-XM_029227097.1 22245987 1 7782 7910 Monodon monoceros 40151 CAG|GTGGGGCTAA...TCAATCTTGAAT/TTGAATCTCAGA...GTTAG|GAC   0 10.859

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);