WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 22190741

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
120268594	GT-AG	0.000192942653383	439	rna-XM_022284613.1 22190741	1	4932161	4932599	Momordica charantia 3673	AAG\|GTATGTAGAT...TTTGTCTTATTC/TTTTGTCTTATT...TGCAG\|TGG	1	1	15.761
120268595	GT-AG	5.084776337538116e-05	101	rna-XM_022284613.1 22190741	2	4931900	4932000	Momordica charantia 3673	CAT\|GTAAGTTCCA...TTTTTTTTTTCC/CCCCTTCTAAAA...CTCAG\|GTC	2	1	21.927
120268596	GT-AG	1.000000099473604e-05	1247	rna-XM_022284613.1 22190741	3	4930591	4931837	Momordica charantia 3673	GAG\|GTGATTTCAC...TGTTCACTAATT/CTGTTGTTCACT...TGTAG\|TTC	1	1	24.316
120268597	GT-AG	7.029121474108792e-05	721	rna-XM_022284613.1 22190741	4	4929775	4930495	Momordica charantia 3673	CTG\|GTAATCATCT...ACTGCCTTTGCA/TCTATTTTAAGT...TTCAG\|GTT	0	1	27.977
120268598	GT-AG	0.0681745928488138	1682	rna-XM_022284613.1 22190741	5	4927979	4929660	Momordica charantia 3673	GAG\|GTATTTTTTA...TGAACTTTATTC/ACTTTATTCATC...TGCAG\|ACT	0	1	32.37
120268599	GT-AG	1.000000099473604e-05	417	rna-XM_022284613.1 22190741	6	4927496	4927912	Momordica charantia 3673	GAG\|GTAGGTGGAC...ACTAACTTAATT/CAATTACTAACT...GATAG\|GTG	0	1	34.913
120268600	GT-AG	0.0315368606692514	117	rna-XM_022284613.1 22190741	7	4927281	4927397	Momordica charantia 3673	AAG\|GTATTTTTAT...TTAATTTTAATT/TTAATTTTAATT...TGCAG\|TTG	2	1	38.69
120268601	GT-AG	4.856604323684587e-05	456	rna-XM_022284613.1 22190741	8	4926406	4926861	Momordica charantia 3673	ATG\|GTAAGTTTTC...AGCATTTTGACA/AGCATTTTGACA...TACAG\|GAT	1	1	54.836

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);