WtMTA: introns: 9 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

9 rows where transcript_id = 22190709

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
120268244	GT-AG	1.000000099473604e-05	476	rna-XM_022276378.1 22190709	1	3881937	3882412	Momordica charantia 3673	CAG\|GTTTGATTGT...AAATCTTTGTTA/ATCTTTGTTATA...AGCAG\|ATT	0	1	9.35
120268245	GT-AG	2.410226558607618e-05	73	rna-XM_022276378.1 22190709	2	3881645	3881717	Momordica charantia 3673	AAG\|GTACATCGAG...CTGTTTTTAAAA/CTGTTTTTAAAA...GACAG\|GTA	0	1	16.768
120268246	GT-AG	0.0024459423025943	392	rna-XM_022276378.1 22190709	3	3881015	3881406	Momordica charantia 3673	AAA\|GTATGAAGTC...TATTTCTTAGCT/GTATTTTTCATC...CAAAG\|ATC	1	1	24.831
120268247	GT-AG	0.001249905620802	158	rna-XM_022276378.1 22190709	4	3880661	3880818	Momordica charantia 3673	AGG\|GTATGTTGCT...GTATTTATGATT/ATGGTATTTATG...TGCAG\|ATT	2	1	31.47
120268248	GT-AG	1.000000099473604e-05	235	rna-XM_022276378.1 22190709	5	3880371	3880605	Momordica charantia 3673	AAG\|GTTGTAATTC...TCCCTTTTGATT/TTTTGATTTATT...TGCAG\|TTG	0	1	33.333
120268249	GT-AG	4.005733272064022e-05	160	rna-XM_022276378.1 22190709	6	3880060	3880219	Momordica charantia 3673	CAG\|GTTTATTCTT...GTTTGCATAATT/AATTGGCTGATG...TGTAG\|GGG	1	1	38.449
120268250	GT-AG	1.000000099473604e-05	98	rna-XM_022276378.1 22190709	7	3879653	3879750	Momordica charantia 3673	AAG\|GTTACTATAT...GAGTTCATGAAG/CTCGAGTTCATG...TGCAG\|CCA	1	1	48.916
120268251	GT-AG	6.852253689090441e-05	148	rna-XM_022276378.1 22190709	8	3879239	3879386	Momordica charantia 3673	GAG\|GTAGTTTTGA...GATTTTTTCATC/GATTTTTTCATC...GGTAG\|ATT	0	1	57.927
120268252	GT-AG	4.842087361961111e-05	150	rna-XM_022276378.1 22190709	9	3878159	3878308	Momordica charantia 3673	CAG\|GTAATCATTA...CGTTTTTTACAA/TCGTTTTTTACA...TTCAG\|ATT	0	1	89.431

Advanced export

JSON shape: default, array, newline-delimited, object

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);