WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 22190663

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
120267522	GT-AG	2.176827127234277e-05	573	rna-XM_022276600.1 22190663	1	6020066	6020638	Momordica charantia 3673	TAG\|GTAAGCTATT...AATATCGTGATT/AATATCGTGATT...CGTAG\|GAC	2	1	7.974
120267523	GT-AG	1.000000099473604e-05	102	rna-XM_022276600.1 22190663	2	6024144	6024245	Momordica charantia 3673	AGT\|GTGAGTACCT...AAGAATTTAACG/TAGTGATTAACA...TGCAG\|GAC	0	1	87.833
120267524	GT-AG	1.000000099473604e-05	146	rna-XM_022276600.1 22190663	3	6024313	6024458	Momordica charantia 3673	GAG\|GTGAGTTATG...GGTTTCTGAGCA/CAATTTGTGACT...TAAAG\|GTC	1	1	89.36
120267525	GT-AG	0.0006427946251668	83	rna-XM_022276600.1 22190663	4	6024557	6024639	Momordica charantia 3673	GTG\|GTATGATCTG...AAAATTTTAATG/AAAATTTTAATG...TTCAG\|GCA	0	1	91.593
120267526	GT-AG	1.683602899660843e-05	88	rna-XM_022276600.1 22190663	5	6024706	6024793	Momordica charantia 3673	AAT\|GTAATTACAC...AGCATTTTATTA/TAGCATTTTATT...AACAG\|AGA	0	1	93.096
120267527	GT-AG	0.000175255483435	83	rna-XM_022276600.1 22190663	6	6024884	6024966	Momordica charantia 3673	TAT\|GTAAGCTAAA...AGAACATTAATG/TTAATGTTTATT...GACAG\|ATC	0	1	95.147
120267528	GT-AG	1.0775746290698389e-05	548	rna-XM_022276600.1 22190663	7	6025144	6025691	Momordica charantia 3673	AAG\|GTATGTGCTA...CTAACTTGGAAA/ATTTGGCTAACT...AACAG\|GCT	0	1	99.18

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);