WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 22150010

descending

id ▼	dinucleotide_pair	is_minor	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
119920775	GT-AG	0	1.000000099473604e-05	65201	rna-XM_036262888.1 22150010	1	193795800	193861000	Molossus molossus 27622	CTG\|GTAAGAGGAT...TTCTTGTTAACC/TTCTTGTTAACC...CCCAG\|CAA	2	1	3.681
119920776	GT-AG	0	1.000000099473604e-05	29091	rna-XM_036262888.1 22150010	2	193766675	193795765	Molossus molossus 27622	TTG\|GTAAGTAAAA...TTCTTTTTAATC/TTCTTTTTAATC...AACAG\|CAA	0	1	4.458
119920777	GT-AG	0	0.009431504612861	1703	rna-XM_036262888.1 22150010	3	193764889	193766591	Molossus molossus 27622	ATG\|GTATGTCTGC...ATGTTTTTGATT/ATGTTTTTGATT...ATTAG\|TGA	2	1	6.356
119920778	GT-AG	0	1.000000099473604e-05	19239	rna-XM_036262888.1 22150010	4	193745527	193764765	Molossus molossus 27622	CAA\|GTAAGTATTA...GCTCTCTAAATT/TGCTCTCTAAAT...TGCAG\|GAG	2	1	9.168
119920779	AT-AC	1	99.99999999884268	1459	rna-XM_036262888.1 22150010	5	193743951	193745409	Molossus molossus 27622	TAA\|ATATCCTTTA...CAAACCTTAACT/CAAACCTTAACT...ATTAC\|ATA	2	1	11.843
119920780	GT-AG	0	1.000000099473604e-05	629	rna-XM_036262888.1 22150010	6	193743237	193743865	Molossus molossus 27622	GGG\|GTAAGAATTC...TTTTTCTGAACT/ATTTTTCTGAAC...TTTAG\|TTG	0	1	13.786
119920781	GT-AG	0	1.000000099473604e-05	3684	rna-XM_036262888.1 22150010	7	193739345	193743028	Molossus molossus 27622	CAG\|GTACAAAATG...TTTATCTTTGCT/TTTCTGTTTATT...TTCAG\|GAA	1	1	18.541
119920782	GT-AG	0	1.000000099473604e-05	1141	rna-XM_036262888.1 22150010	8	193737908	193739048	Molossus molossus 27622	CCG\|GTAATACCAT...ATATTCTAGACT/TTGTTTTTCACT...AATAG\|GTC	0	1	25.309

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);