WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 22149939

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
119918813	GT-AG	0.0002438241144452	167	rna-XM_036274654.1 22149939	1	157302844	157303010	Molossus molossus 27622	CTG\|GTAAGCTCCC...CCTTCCTTGAGC/GAGCCACTAATC...CTTAG\|CCC	1	1	26.441
119918814	GT-AG	1.000000099473604e-05	540	rna-XM_036274654.1 22149939	2	157301786	157302325	Molossus molossus 27622	AAG\|GTGAGAGGGG...CTGTTCTTGCCT/TCTTGCCTGAGC...TCCAG\|TTT	0	1	33.152
119918815	GT-AG	1.000000099473604e-05	1246	rna-XM_036274654.1 22149939	3	157300299	157301544	Molossus molossus 27622	CAG\|GTGAGAAAGG...CCTTTCCTGATG/TCTCCTCTCATT...CACAG\|GGA	1	1	36.274
119918816	GT-AG	1.000000099473604e-05	423	rna-XM_036274654.1 22149939	4	157299801	157300223	Molossus molossus 27622	TGG\|GTGAGTTGCT...TCTCCTTTCATC/TCTCCTTTCATC...TTCAG\|CTT	1	1	37.246
119918817	GT-AG	1.000000099473604e-05	1642	rna-XM_036274654.1 22149939	5	157298100	157299741	Molossus molossus 27622	ACG\|GTCAGAACTG...CCATCCCTGACA/CCATCCCTGACA...CTCAG\|GTA	0	1	38.01
119918818	GT-AG	1.000000099473604e-05	459	rna-XM_036274654.1 22149939	6	157297440	157297898	Molossus molossus 27622	GTG\|GTGAGTACAG...GATTTCTTCCAT/AGGAAAGTCACT...TACAG\|GCC	0	1	40.614
119918819	GT-AG	1.000000099473604e-05	150	rna-XM_036274654.1 22149939	7	157297163	157297312	Molossus molossus 27622	CAG\|GTAAGGACCA...GTTCCCTTCTCA/TCCCTTCTCATT...CCCAG\|AAG	1	1	42.259
119918820	GT-AG	1.000000099473604e-05	260	rna-XM_036274654.1 22149939	8	157293426	157293685	Molossus molossus 27622	CAG\|GTGAGTGAAA...TAATCCTTCATC/ACTCCTTTCATC...CCTAG\|GCC	1	1	87.304

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);