introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 21930990

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
118866841 GT-AG 0 1.000000099473604e-05 3584 rna-XM_035014698.1 21930990 1 146126 149709 Mirounga leonina 9715 CAG|GTGAGCTGCG...ACTTCTTTATCT/GACTTCTTTATC...TCCAG|GGT 2 1 5.167
118866842 GT-AG 0 1.000000099473604e-05 281 rna-XM_035014698.1 21930990 2 149841 150121 Mirounga leonina 9715 AAG|GTAAGAAGCA...GCCTCCTGGAAT/TATGGTTGTATT...CCTAG|GCC 1 1 14.702
118866843 GT-AG 0 1.000000099473604e-05 641 rna-XM_035014698.1 21930990 3 150190 150830 Mirounga leonina 9715 ATG|GTAAGGAGTC...TTGCCTCTGATG/TTGCCTCTGATG...CTCAG|GAC 0 1 19.651
118866844 GT-AG 0 1.000000099473604e-05 138 rna-XM_035014698.1 21930990 4 151055 151192 Mirounga leonina 9715 CAG|GTGCACCTGG...CACTTCTTTCTA/GTTGATGTCACT...GCCAG|GCT 2 1 35.953
118866845 GT-AG 0 2.1872311005722125e-05 1764 rna-XM_035014698.1 21930990 5 151276 153039 Mirounga leonina 9715 GCT|GTAAGTGTCT...CTACCCTCACCC/ATCTCTGTCACT...TTTAG|TTG 1 1 41.994
118866846 GT-AG 0 1.000000099473604e-05 2881 rna-XM_035014698.1 21930990 6 153181 156061 Mirounga leonina 9715 CAG|GTAAAAACCA...CACCTCTTTCCT/TGAGGTCTGATA...TGCAG|GGA 1 1 52.256
118866847 GT-AG 0 1.000000099473604e-05 3637 rna-XM_035014698.1 21930990 7 156277 159913 Mirounga leonina 9715 AAG|GTGAAGAAAG...AGAAGGTTGATT/AGAAGGTTGATT...TACAG|GTG 0 1 67.904
118866848 GT-AG 0 1.000000099473604e-05 5764 rna-XM_035014698.1 21930990 8 160064 165827 Mirounga leonina 9715 ATG|GTAAATATAA...GTAACCTCAAAT/TTTTTTTCCATT...TTCAG|GAG 0 1 78.821

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);