WtMTA: introns: 9 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

9 rows where transcript_id = 21930899

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
118866291	GT-AG	1.000000099473604e-05	11089	rna-XM_035012140.1 21930899	1	17555	28643	Mirounga leonina 9715	AGG\|GTAAGGGAGA...TTCTCCTCATTC/TTTCTCCTCATT...TCTAG\|CTT	0	1	2.976
118866292	GT-AG	1.000000099473604e-05	6798	rna-XM_035012140.1 21930899	2	28948	35745	Mirounga leonina 9715	TAG\|GTAATAATCT...TTTCTTTTATTG/CTTTTATTGACC...AACAG\|GAA	1	1	23.082
118866293	GT-AG	1.000000099473604e-05	10392	rna-XM_035012140.1 21930899	3	35838	46229	Mirounga leonina 9715	CTC\|GTGAGTATTA...AGGTTCTTACTT/GAGGTTCTTACT...TTTAG\|CTG	0	1	29.167
118866294	GT-AG	1.000000099473604e-05	1823	rna-XM_035012140.1 21930899	4	46401	48223	Mirounga leonina 9715	AAG\|GTTAGTTTGT...TGAGTTTTATAC/ATGAGTTTTATA...ATAAG\|GAA	0	1	40.476
118866295	GT-AG	1.000000099473604e-05	2405	rna-XM_035012140.1 21930899	5	48419	50823	Mirounga leonina 9715	GAG\|GTAAAGACGT...TTAGCCTTTTTC/GCCTTTTTCATT...TGTAG\|CAT	0	1	53.373
118866296	GT-AG	0.0011288193216982	1519	rna-XM_035012140.1 21930899	6	50944	52462	Mirounga leonina 9715	TTT\|GTAAGTTTTG...TTGCTATTAGTA/ACATGTGTAATT...TCTAG\|TTA	0	1	61.31
118866297	GT-AG	0.0011867981753187	2992	rna-XM_035012140.1 21930899	7	52538	55529	Mirounga leonina 9715	CAG\|GTAACTTGAC...AATCGCTTATCT/GAATATTTGATA...TGTAG\|CTT	0	1	66.27
118866298	GT-AG	0.0002048575062883	2161	rna-XM_035012140.1 21930899	8	55623	57783	Mirounga leonina 9715	AAG\|GTATTTACAT...ATTGTGTTGATT/ATTGTGTTGATT...CACAG\|ATG	0	1	72.421
118866299	GT-AG	1.000000099473604e-05	954	rna-XM_035012140.1 21930899	9	57880	58833	Mirounga leonina 9715	GAG\|GTGAGAAGGC...CTGCCCTTTTTT/AGGATGGTTACA...CTCAG\|AAA	0	1	78.77

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);