introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

6 rows where transcript_id = 21894406

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Suggested facets: score, phase, in_cds

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
118584991 GT-AG 0 1.000000099473604e-05 70138 rna-XM_016198715.1 21894406 3 9092274 9162411 Miniopterus natalensis 291302 AAG|GTTAGTAGTT...CATATTTCAATG/CAATGCTTCATT...TACAG|GTA 1 1 14.745
118584992 GT-AG 0 1.000000099473604e-05 48615 rna-XM_016198715.1 21894406 4 9162583 9211197 Miniopterus natalensis 291302 CCC|GTGAGTACAG...GGCCTCTTCCTC/CGGGCGCTCACG...TTCAG|CCT 1 1 22.959
118584993 GT-AG 0 1.1958173027359548e-05 15432 rna-XM_016198715.1 21894406 5 9211458 9226889 Miniopterus natalensis 291302 AAG|GTAAACCGCC...GGGATTTTAGCC/AGGTCTCTCATT...TCTAG|ATG 0 1 35.447
118584994 GT-AG 0 1.000000099473604e-05 1868 rna-XM_016198715.1 21894406 6 9227187 9229054 Miniopterus natalensis 291302 CAG|GTAAGGATTT...GTGTCCTTCCTT/GCGGGCCTAACC...CCAAG|GTG 0 1 49.712
118585752 GT-AG 0 4.95882579205575e-05 14226 rna-XM_016198715.1 21894406 1 9059095 9073320 Miniopterus natalensis 291302 TCG|GTAAATTCCA...CATGCCCTGATG/CATGCCCTGATG...TACAG|GTA   0 5.908
118585753 GT-AG 0 1.000000099473604e-05 18693 rna-XM_016198715.1 21894406 2 9073492 9092184 Miniopterus natalensis 291302 CCG|GTGAGTATCT...AACATATTGAAA/CATTATGTAACA...TTAAG|GAA   0 14.121

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);