WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 21894404

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
118584979	GT-AG	1.000000099473604e-05	790	rna-XM_016197204.1 21894404	3	2188996	2189785	Miniopterus natalensis 291302	AAG\|GTGAGCCAGG...TTTTCCTTTTTT/AGAAAATTAATT...TGCAG\|CGC	0	1	52.783
118584980	GT-AG	1.000000099473604e-05	562	rna-XM_016197204.1 21894404	4	2188304	2188865	Miniopterus natalensis 291302	AAG\|GTAGGTCCGG...CGGCTCTTTCTC/GCGGCACTCACC...TGCAG\|TGG	1	1	59.362
118584981	GT-AG	1.000000099473604e-05	1435	rna-XM_016197204.1 21894404	5	2186705	2188139	Miniopterus natalensis 291302	AGG\|GTAAGAAGCT...GCTTTTTTAAAA/GAGAACCTCATT...TCCAG\|TTC	0	1	67.662
118584982	GT-AG	0.0002092454013979	384	rna-XM_016197204.1 21894404	6	2186118	2186501	Miniopterus natalensis 291302	CAG\|GTAACCGAGG...CTCTCTTTGGTA/TTTGGTATTAAT...TGCAG\|GTC	2	1	77.935
118584983	GT-AG	1.000000099473604e-05	149	rna-XM_016197204.1 21894404	7	2185790	2185938	Miniopterus natalensis 291302	CAG\|GTCAGTACCA...CCTCTCTTGTTT/ACTTTGTGCATT...CGCAG\|AGA	1	1	86.994
118585750	GT-AG	1.000000099473604e-05	2692	rna-XM_016197204.1 21894404	1	2191252	2193943	Miniopterus natalensis 291302	TGA\|GTAGGTGCCG...GTCACCCTGAAG/CAGAAAGTCACC...TTCAG\|GGA		0	2.783
118585751	GT-AG	1.000000099473604e-05	476	rna-XM_016197204.1 21894404	2	2190652	2191127	Miniopterus natalensis 291302	AAG\|GTTAGTGCAA...ATATTATTACCC/CCCTGTTTCATT...TCCAG\|CCA		0	9.059

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);