WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 21894329

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
118583487	GT-AG	1.000000099473604e-05	124593	rna-XM_016195673.1 21894329	1	10070508	10195100	Miniopterus natalensis 291302	AAG\|GTGAGGAGTC...TAGCTTTTAACA/TAGCTTTTAACA...AACAG\|GAA	0	1	3.88
118583488	GT-AG	1.000000099473604e-05	53085	rna-XM_016195673.1 21894329	2	10195255	10248339	Miniopterus natalensis 291302	AAG\|GTTAGAATAA...ATTTTCTTTGCA/ACATATCTGAAC...TTCAG\|TGA	1	1	5.323
118583489	GT-AG	0.010674900812068	5168	rna-XM_016195673.1 21894329	3	10248501	10253668	Miniopterus natalensis 291302	AGC\|GTAAGCTGCT...TTTTTCTTAAAT/CTTTTTCTTAAA...TCTAG\|ATG	0	1	6.832
118583490	GT-AG	1.000000099473604e-05	18932	rna-XM_016195673.1 21894329	4	10253819	10272750	Miniopterus natalensis 291302	CAG\|GTAATTCTCC...CATTCATTCATT/CATTCATTCATT...TTCAG\|GAG	0	1	8.237
118583491	GT-AG	0.0043655780871806	391	rna-XM_016195673.1 21894329	5	10272862	10273252	Miniopterus natalensis 291302	ATG\|GTAACTACTT...GACTTCTTAAAA/CATTTATTTATT...CACAG\|GTC	0	1	9.277
118583492	GT-AG	1.000000099473604e-05	951	rna-XM_016195673.1 21894329	6	10273326	10274276	Miniopterus natalensis 291302	CAG\|GTAAGAATCT...ATATCCTTGGTC/ATAATGTTTATT...TGTAG\|TCA	1	1	9.962
118583493	GT-AG	5.21964943487369e-05	638	rna-XM_016195673.1 21894329	7	10274408	10275045	Miniopterus natalensis 291302	AAG\|GTATGATAAT...TCCTCTTTATAA/TAAGATTTGATT...TAAAG\|ATT	0	1	11.189
118583494	GT-AG	1.000000099473604e-05	2316	rna-XM_016195673.1 21894329	8	10284428	10286743	Miniopterus natalensis 291302	GTG\|GTAAATGAGC...TAACTCTAAATA/AAATTTTTTATT...TTTAG\|AAG	1	1	99.11

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);