introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 21575217

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
116649804 GT-AG 0 1.000000099473604e-05 2263 rna-XM_008942353.1 21575217 1 5304 7566 Merops nubicus 57421 GGG|GTGAGTGGCC...TTATTTTTAATG/TTATTTTTAATG...AACAG|GGT 2 1 16.794
116649805 GT-AG 0 1.000000099473604e-05 2833 rna-XM_008942353.1 21575217 2 7640 10472 Merops nubicus 57421 AAC|GTAAGTCCCC...CTAACCTTGTTT/TTGCTTCTAACC...CCCAG|TGC 0 1 24.755
116649806 GT-AG 0 1.000000099473604e-05 737 rna-XM_008942353.1 21575217 3 10564 11300 Merops nubicus 57421 TGA|GTGAGTGCCC...TCCTCCCTGACC/TCCTCCCTGACC...TCCAG|CTG 1 1 34.678
116649807 GT-AG 0 1.000000099473604e-05 2704 rna-XM_008942353.1 21575217 4 11502 14205 Merops nubicus 57421 TGG|GTAAGGAGCC...TTTTTTTTTTCT/ATGGATCTGACT...CACAG|GGG 1 1 56.598
116649808 GT-AG 0 1.000000099473604e-05 522 rna-XM_008942353.1 21575217 5 14289 14810 Merops nubicus 57421 ATG|GTAAGAGCTG...GTTTTTTTAATC/GTTTTTTTAATC...ACCAG|GAG 0 1 65.649
116649809 GT-AG 0 1.000000099473604e-05 1243 rna-XM_008942353.1 21575217 6 14868 16110 Merops nubicus 57421 AAG|GTAAGAGACC...GATCTTTTACTT/TGATCTTTTACT...TTAAG|GGT 0 1 71.865
116649810 GT-AG 0 0.0077928949078483 376 rna-XM_008942353.1 21575217 7 16267 16642 Merops nubicus 57421 GGG|GTAACGTTTC...TCTCCTTTGAAA/TCTCCTTTGAAA...TACAG|CAC 0 1 88.877

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);