WtMTA: introns: 9 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

9 rows where transcript_id = 21575205

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
116649693	GT-AG	0.0017957016496594	952	rna-XM_008940732.1 21575205	1	46281	47232	Merops nubicus 57421	GAG\|GTACGTTTGT...TTTGCTTTAATC/TTTGTATTGATT...TGCAG\|GTC	1	1	11.118
116649694	GT-AG	1.000000099473604e-05	1448	rna-XM_008940732.1 21575205	2	44734	46181	Merops nubicus 57421	AAG\|GTACAACAGA...CCACTCTTAACA/CTGTATCTCACC...TTCAG\|GTT	1	1	17.444
116649695	GT-AG	1.000000099473604e-05	1742	rna-XM_008940732.1 21575205	3	42895	44636	Merops nubicus 57421	GGG\|GTGAGTGATG...TCTGTCTGACTG/TTCTGTCTGACT...CTTAG\|GTC	2	1	23.642
116649696	GT-AG	1.000000099473604e-05	1869	rna-XM_008940732.1 21575205	4	40849	42717	Merops nubicus 57421	TGC\|GTAAGAGGAT...ATCCTTTTGAAA/ATTGTACTAATG...CATAG\|AGC	2	1	34.952
116649697	GT-AG	5.874968793503502e-05	125	rna-XM_008940732.1 21575205	5	40548	40672	Merops nubicus 57421	TAG\|GTATTACTAC...CTCTTCTTCATA/CTCTTCTTCATA...TTCAG\|GTT	1	1	46.198
116649698	GT-AG	0.0001406666107537	1539	rna-XM_008940732.1 21575205	6	38896	40434	Merops nubicus 57421	AAG\|GTAACATATA...CCCTTCTTGTTT/TGTAAAATCACT...CTAAG\|GAA	0	1	53.419
116649699	GT-AG	1.000000099473604e-05	391	rna-XM_008940732.1 21575205	7	38312	38702	Merops nubicus 57421	ATG\|GTAAGTCTTT...CAAATCTTAAGT/AAAGTATTAATT...TTCAG\|GAC	1	1	65.751
116649700	GT-AG	1.598425947302988e-05	4022	rna-XM_008940732.1 21575205	8	34172	38193	Merops nubicus 57421	ACA\|GTAAGCAGAA...GCCCTCATGACG/AGGGCCCTCATG...TCTAG\|GAA	2	1	73.291
116649701	GT-AG	1.000000099473604e-05	496	rna-XM_008940732.1 21575205	9	33470	33965	Merops nubicus 57421	CTG\|GTGAGTAGGG...ATTTGTTTAATA/ATTTGTTTAATA...TTCAG\|GGC	1	1	86.454

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);